View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17180_high_2 (Length: 444)
Name: NF17180_high_2
Description: NF17180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17180_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 247 - 428
Target Start/End: Complemental strand, 38644159 - 38643978
Alignment:
| Q |
247 |
tccctttccgtctacctaagctcactccgaccatttcgattatgattccggttctgagttcccactctgatccttcgcttacttgtagcttcgtcttctc |
346 |
Q |
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| T |
38644159 |
tcccttttcgtctacctaagctcactccgaccatttcgattctgattccggttctgagttcccactctgatccttcgcttacttgtagcttcgtcttctc |
38644060 |
T |
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| Q |
347 |
atgtttacggcacggcggcggcgttggtggtgatggagtaactgtagccgtagccatattttgcatttgggtcattgtttct |
428 |
Q |
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| T |
38644059 |
atacttacagcacggtggcggcgttggtggtgatggagtaactgtaaccgtagccatattttgcatttgggtcattgtttct |
38643978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 38644403 - 38644284
Alignment:
| Q |
12 |
tcatcaatatgcagtgcttcatctcttcttcatttttcacttgtttggtccctgaactagaattttccaatgtaaaacacaaccacatcatcttctggga |
111 |
Q |
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| T |
38644403 |
tcatcaatatgcagtgcttcatttcttcttcatttttcacttgtttggtccctgaactagaatttt--aatgtaaaacacaataacatcatcttcaggga |
38644306 |
T |
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| Q |
112 |
acaagtgtaacaaaattaacaa |
133 |
Q |
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| T |
38644305 |
acaagtgtaacaaaattaacaa |
38644284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 13597775 - 13597704
Alignment:
| Q |
290 |
gattccggttctgagttcccactctgatccttcgcttacttgtagcttcgtcttctcatgtttacggcacgg |
361 |
Q |
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| T |
13597775 |
gattccggttatgagttccctctctgatcctttgcttacttgtaacttcgtcttctcttgtttccggcacgg |
13597704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 38644206 - 38644173
Alignment:
| Q |
211 |
cgtcgtttgtgtccccaacaaccttcggcggtgg |
244 |
Q |
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| T |
38644206 |
cgtcgtttgtgtccccaacaacctccggcggtgg |
38644173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 290 - 394
Target Start/End: Complemental strand, 38235608 - 38235504
Alignment:
| Q |
290 |
gattccggttctgagttcccactctgatccttcgcttacttgtagcttcgtcttctcatgtttacggcacggcggcggcgttggtggtgatggagtaact |
389 |
Q |
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| T |
38235608 |
gattccggttctgagttccctctctgatccttcgtttacttgtaacttcatcttctcttgtttccggcacggtggcggtggtggtggtggtggagtagct |
38235509 |
T |
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| Q |
390 |
gtagc |
394 |
Q |
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||||| |
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| T |
38235508 |
gtagc |
38235504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 39272941 - 39272986
Alignment:
| Q |
12 |
tcatcaatatgcagtgcttcatctcttcttcatttttcacttgttt |
57 |
Q |
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| T |
39272941 |
tcatcaatatgcaatgcataatttcttcttcatttttcacttgttt |
39272986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 428
Target Start/End: Complemental strand, 38235404 - 38235376
Alignment:
| Q |
400 |
ccatattttgcatttgggtcattgtttct |
428 |
Q |
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| T |
38235404 |
ccatattttgcatttgggtcattgtttct |
38235376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 290 - 367
Target Start/End: Complemental strand, 37609963 - 37609886
Alignment:
| Q |
290 |
gattccggttctgagttcccactctgatccttcgcttacttgtagcttcgtcttctcatgtttacggcacggcggcgg |
367 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||| |
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| T |
37609963 |
gattccggttatgagttccctctctgatccttcgcttacttgtaacttcgtcttctcttgtttccggcacggtggcgg |
37609886 |
T |
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