View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17180_low_3 (Length: 420)
Name: NF17180_low_3
Description: NF17180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17180_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 32 - 407
Target Start/End: Complemental strand, 34962678 - 34962303
Alignment:
| Q |
32 |
caacattagtgagtacagtaacactacagagtttttaagtcagaacggattaaacggacctcacccggcggaatcatcggcagcagcgaggcaaggacgg |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34962678 |
caacattagtgagtacagtaacactacagagtttttaagtcagaacggattaaacggacctcacccggcggaatcatcggcagcggcgaggcaaggacgg |
34962579 |
T |
|
| Q |
132 |
aggagtacaccacttttcttaagagcaggtgaacagagttcaggacgaagttgtcttccaaagacaaggttcccgccatcagagactgatccgatcgatt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34962578 |
aggagtacaccacttttcttaagagcaggtgaacagagttcaggacgaagttgtcttccaaagacaaggttcccgccatcagagactgatccgatcgatt |
34962479 |
T |
|
| Q |
232 |
tcacggagaggatggaagcgccattggtgagatgttcacgatgaagtttgttgagacgagggagggaggagagtgtggtggcgcgtgacaacactcgtga |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34962478 |
tcacggagaggatggaagcgccattggtgagatgttcacgatgaagtttgttgagacgagggagggaggagagtgtggtggcgcgtgacaacactcgtga |
34962379 |
T |
|
| Q |
332 |
ctccattgggatcaaaatgtgggaagatgataaacaagtagagagtgatatatggatgatgttggtgttggtacct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34962378 |
ctccattgggatcaaaatgtgggaagatgataaacaagtagagagtgatatatggatgatgttggtgttggtacct |
34962303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University