View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17180_low_4 (Length: 379)
Name: NF17180_low_4
Description: NF17180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17180_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 182 - 371
Target Start/End: Complemental strand, 14176635 - 14176447
Alignment:
| Q |
182 |
ttcatcatctaccattttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaag |
281 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
14176635 |
ttcatcatc-accatcttcaactactggctcaccatcaaccccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaag |
14176537 |
T |
|
| Q |
282 |
tgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgct |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14176536 |
tgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgct |
14176447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 182 - 371
Target Start/End: Original strand, 28609241 - 28609429
Alignment:
| Q |
182 |
ttcatcatctaccattttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaag |
281 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
28609241 |
ttcatcatc-accatcttcaactactggctcaccatcaaccccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaag |
28609339 |
T |
|
| Q |
282 |
tgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgct |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28609340 |
tgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgcttatgaaacactacatctctgct |
28609429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 182 - 371
Target Start/End: Complemental strand, 12933365 - 12933177
Alignment:
| Q |
182 |
ttcatcatctaccattttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaag |
281 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
12933365 |
ttcatcatc-accatcttcaactactggctcaccatcaaccccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaag |
12933267 |
T |
|
| Q |
282 |
tgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgct |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933266 |
tgtaagatcaaccttaccataacgtttaggtgtttctagaatagtagaatctgacatagtttcttgctcatgaaacactacatctctgct |
12933177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 192 - 371
Target Start/End: Complemental strand, 15299146 - 15298967
Alignment:
| Q |
192 |
accattttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaagtgtaagatca |
291 |
Q |
| |
|
||||| |||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
15299146 |
accatcttcaactactaactcaccattaaccccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaactgtaagatca |
15299047 |
T |
|
| Q |
292 |
accttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgct |
371 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299046 |
accttaccataacgtttaggtgtttctggaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgct |
15298967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 207 - 358
Target Start/End: Original strand, 38994924 - 38995074
Alignment:
| Q |
207 |
tggctcaccatcaaccctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaagtgtaagatcaaccttaccataacgt |
306 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| |||||||||| | |||||||||| |||||| ||||| |||||||| |||||||||||| | |
|
|
| T |
38994924 |
tggctcaccatcaaccctagggttttaatcaagatctcccccttctttggcaactcttataggaggagtggttagtgtaaggtcaaccttaccaccgtgc |
38995023 |
T |
|
| Q |
307 |
ttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaaca |
358 |
Q |
| |
|
||||||||||| |||||| | ||| || ||||||||||||||||||||||| |
|
|
| T |
38995024 |
ttaggtgtttcaggaatagta-aatttgtcatagtttcttgctcatgaaaca |
38995074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University