View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17180_low_6 (Length: 351)
Name: NF17180_low_6
Description: NF17180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17180_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 47481237 - 47481581
Alignment:
| Q |
1 |
attaagcttgtggcaaaataattgaaataaaaaagcttaccattcttggggcaccatcaatttcagcaacttccataccagtaataatcataccaggaac |
100 |
Q |
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| T |
47481237 |
attaagcttgtggctaaataattgaaataaaaaagcttaccattcttggggcaccatcaatttcagcaacttccataccagtaacaatcataccaggaac |
47481336 |
T |
|
| Q |
101 |
aacttcccttgtaagacgaacaatagcatcttcagcagtattcatatcaagtgctttcattccaggaacatgatcaatcatgccaatactcttcaacctc |
200 |
Q |
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| T |
47481337 |
aacttcccttgtaagacgaacaatagcatcttcagcagtattcatatcaagtgctttcattccaggaacatgatcaatcatgccaatactcttcaacctc |
47481436 |
T |
|
| Q |
201 |
ttaacaccagtagcaccaaaaggaccatcatgtccacaagaactcacaacaaccttagcctccataacattaggatccatgcaagattgtgtatcatggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47481437 |
ttaacaccagtagcaccaaaaggaccatcatgtccacaagaactcacaacaaccttagcttccataacattaggatccatgcaagattgtgtatcatggt |
47481536 |
T |
|
| Q |
301 |
tcatcgaaaccaaagcccagtttgtaacaacaccagcaactctgt |
345 |
Q |
| |
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| T |
47481537 |
tcatcgaaaccaaagcccagtttgtaacaacaccagcaactctgt |
47481581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 37 - 343
Target Start/End: Original strand, 31407171 - 31407477
Alignment:
| Q |
37 |
ttaccattcttggggcaccatcaatttcagcaacttccataccagtaataatcataccaggaacaacttcccttgtaagacgaacaatagcatcttcagc |
136 |
Q |
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||||||||||||| ||||||||||| |||||||| ||||| ||||| | ||||| ||||||||||| ||||| || || | |||||||||||| || || |
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| T |
31407171 |
ttaccattcttggagcaccatcaatctcagcaacctccatgccagttactatcattccaggaacaacctccctagtgagcctaacaatagcatcctcggc |
31407270 |
T |
|
| Q |
137 |
agtattcatatcaagtgctttcattccaggaacatgatcaatcatgccaatactcttcaacctcttaacaccagtagcaccaaaaggaccatcatgtcca |
236 |
Q |
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||| ||||| || || || ||||||||||| || |||||||| ||||||||||| | |||||| |||||||| || ||||||||||||||||| ||| |
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| T |
31407271 |
agtgttcatgtcgagggccttcattccaggcacggtatcaatcaaaccaatactcttgagcctcttcacaccagtggctccaaaaggaccatcatggcca |
31407370 |
T |
|
| Q |
237 |
caagaactcacaacaaccttagcctccataacattaggatccatgcaagattgtgtatcatggttcatcgaaaccaaagcccagtttgtaacaacaccag |
336 |
Q |
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||||| || || ||||| |||| |||||||||||| || |||||||| ||||| || ||||||||||| ||||||||||||||||| || ||||||||| |
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| T |
31407371 |
caagagctaaccacaactttagactccataacatttgggtccatgcaggattgagtgtcatggttcattgaaaccaaagcccagttagtgacaacaccac |
31407470 |
T |
|
| Q |
337 |
caactct |
343 |
Q |
| |
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||||||| |
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|
| T |
31407471 |
caactct |
31407477 |
T |
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