View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17180_low_9 (Length: 301)
Name: NF17180_low_9
Description: NF17180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17180_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 38102214 - 38102489
Alignment:
| Q |
8 |
cgaagaaaatgtagttcttatgaaagtggcggctacgatgtttttgtaggtacataaaagaaggtagcacggttagcgtaatgggagttgttcatagaaa |
107 |
Q |
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| T |
38102214 |
cgaagaaaatgtagttcttatgaaagtggcggctacgatgtttttgtaggtacataaaagaaggtagcacggttagcgtaatgggagttgttcatagaaa |
38102313 |
T |
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| Q |
108 |
tgacaatgtacttatgattgtgcctccacctgagcctttgacgaccggatgccaatgaaggtattgttttgagatgcgaagatacatcaaagatgtgatt |
207 |
Q |
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| T |
38102314 |
tgacaatgtacttatgattgtgcctccacctgagcctttgacgaccggatgccaatgaaggtattgttttgagatgcgaagatacatcaaagatgtgatt |
38102413 |
T |
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| Q |
208 |
ccagtgtagttatcttcctatcccatgagtgagtgagtctctctaggttctattcttctttgagaaaacaaattga |
283 |
Q |
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| T |
38102414 |
ccagtgtagttatcttcctatcccatgagtgagtgagtctctctaggttctattcttctttgagaaaacaaattga |
38102489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 300254 - 300110
Alignment:
| Q |
20 |
agttcttatgaaagtggcggctacgatgtttttgtaggtacataaaagaaggtagcacggttagcgtaatgggagttgttcatagaaatgacaatgtact |
119 |
Q |
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| T |
300254 |
agttcttatgaaactggcggctatgatgtttttgtaggtacataaaagaaggtagcacggttagtgtaatgggagttgttcatagaaatgacaatgtact |
300155 |
T |
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| Q |
120 |
tatgattgtgcctccacctgagcctttgacgaccggatgccaatg |
164 |
Q |
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| T |
300154 |
tatgattgtgcctccgcctgagcctttgacgaccggatgccaatg |
300110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 300082 - 299958
Alignment:
| Q |
163 |
tgaaggtattgttttgagatgcgaagatacatcaaagat----gtgattccagtgtagttatcttcctatcccatgagtgagtgagtctctctaggttct |
258 |
Q |
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| T |
300082 |
tgaaggtattgttttgagatgcgaagatacatcaaagattgatgtgattccagtgtagttatcttcttatcccctgagtgagtgagtctctctaggttct |
299983 |
T |
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| Q |
259 |
attcttctttgagaaaacaaattga |
283 |
Q |
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| T |
299982 |
attcttctttgagaaaacaaattga |
299958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 1322853 - 1322932
Alignment:
| Q |
64 |
aaagaaggtagcacggttagcgtaatgggagttgttcatagaaatgacaatgtacttatgattgtgcctccacctgagcc |
143 |
Q |
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| T |
1322853 |
aaagaaggaagcacggtgagtgtaatgggggttgttcacaggaatgagaacgtgcttatgattgttcctccaccagagcc |
1322932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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