View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17181_low_1 (Length: 620)
Name: NF17181_low_1
Description: NF17181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17181_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Original strand, 30339780 - 30340376
Alignment:
| Q |
1 |
gctgattattgtttttgtatatcattttctatgaagcttttgaaatttcaattaaagaaacatttgacaaattgggacagctataggtgcatatgtttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30339780 |
gctgattattgtttttgtatatcattttctatgaagcttttgaaattttaattaaagaaacatttgacaaattgggacagcta--ggtgcatatgtttac |
30339877 |
T |
|
| Q |
101 |
aaatatgacacctagagatcatgaatgtatagtaatagtatacgtatatatattgtagcatctatactgtattgagatagtatgagttggggtgaacatg |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30339878 |
aaatatgccacctagagatcatgaatgtatagtaatagtata------tagattgtagcatctatactgtattgagatagtatgagttggggtgaacatg |
30339971 |
T |
|
| Q |
201 |
gttatatgttaagcagaatgctaattttcctttagaatgagtctatgatagtgaaaggttagtactaatactatgtctaaaattgtcatttcataattat |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30339972 |
gttatatgttaaacagaatgctaattttcctttagaatgagtctatgatagtgaaaggttagtactaatactatgtctaaaattgtcatttcaaaattat |
30340071 |
T |
|
| Q |
301 |
taagaatagattgttgtttatgcttgattgctccttttgttccttatagatcacaactgtattagtttggtatctaaattctaattgtgagagttgagtc |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30340072 |
taagaatggattgttgtttatgcttgattgctccttttgttccttatagatcacaattgtattagtttggtctctaaattctaattgtgagagttgagtc |
30340171 |
T |
|
| Q |
401 |
cctgttttgatctcctggtagtgttattttttcgaatcggttgaaatacacttccaaattcctctttgattcatgattctaatcaaaattgtgatacttt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30340172 |
cctgttttgatctcctggtagtgttattttttcgaatcggttgaaatgcgcttccaaattcctctttgattcatgattctaatcaaaattgtgatacttt |
30340271 |
T |
|
| Q |
501 |
aattttcatgctccctctaattgttccttc-nnnnnnnnnnnnntgctccctctaattgtgaatgtgtgtatggactttttagaccaagtaagcaagcac |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30340272 |
aattttcatgctccctctaattgttccttcaaaaaaaaaaaaaatgctccctctaattgtgaatgcgtgtatggactttttagaccaagtaagcaagcac |
30340371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 288 - 604
Target Start/End: Original strand, 23915862 - 23916177
Alignment:
| Q |
288 |
atttcataattattaagaatagattgttgtttatgcttgattgctccttttgttccttatagatcacaactgtattagtttggtatctaaattctaattg |
387 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
23915862 |
atttcataattattaagaatggattgttgtttatgcttgatttctccttttgttccttatatatcacaattgtattagtttggtctctaaattctaatcg |
23915961 |
T |
|
| Q |
388 |
tgagagttgagtccctgttttgatctcctggtagtgttattttttcgaatcggttgaaatacacttccaaattcctctttgattcatgattctaatcaaa |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23915962 |
tgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatgattctaataaaa |
23916061 |
T |
|
| Q |
488 |
attgtgatactttaattttcatgctccctctaattgttccttcnnnnnnnnnnnnntgctccctctaattgtgaatgtgtgtatggactttttagaccaa |
587 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23916062 |
gttgtgatactttaattttcaagctccctctaattgttccttc-aaaaaaaaaaaatgctccctctaattgtgaatgcgtgtatggactttttagaccaa |
23916160 |
T |
|
| Q |
588 |
gtaagcaagcaccatag |
604 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
23916161 |
gtaagcaagcaccatag |
23916177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 288 - 604
Target Start/End: Complemental strand, 18989660 - 18989344
Alignment:
| Q |
288 |
atttcataattattaagaatagattgttgtttatgcttgattgctccttttgttccttatagatcacaactgtattagtttggtatctaaattctaattg |
387 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
18989660 |
atttcataattattaagaatggattgttgtttatgcttgatttctccttctgttccttatatatcacaattgtattagtttggtctctaaattctaatcg |
18989561 |
T |
|
| Q |
388 |
tgagagttgagtccctgttttgatctcctggtagtgttattttttcgaatcggttgaaatacacttccaaattcctctttgattcatgattctaatcaaa |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18989560 |
tgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatgattctaataaaa |
18989461 |
T |
|
| Q |
488 |
attgtgatactttaattttcatgctccctctaattgttccttcnnnnnnnnnnnnntgctccctctaattgtgaatgtgtgtatggactttttagaccaa |
587 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18989460 |
gttttgatactttaattttcaagctccctctaattgttccttcaaaaaaaaaaaaaagctccctctaattgtgaatgcgtgtatggactttttagaccaa |
18989361 |
T |
|
| Q |
588 |
gtaagcaagcaccatag |
604 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
18989360 |
gtaagcaagcaccatag |
18989344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 9e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 171 - 429
Target Start/End: Complemental strand, 54435135 - 54434868
Alignment:
| Q |
171 |
attgagatagtatgagttggggtgaacatggttatat-gttaagcagaatgctaattttcctttagaatgagtctatgat---agtgaaaggttagtact |
266 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
54435135 |
attgagatagtgtgagttggggtgaagatggttaacttgttaagcagaatgctaattttcctttagaatgagtctatgatgatagtgaaaggttagtaat |
54435036 |
T |
|
| Q |
267 |
aatactatgtctaaaattgtcatttcataattattaagaatagattgttgtttatg-cttgattgctccttttgttccttatagatcacaactgtattag |
365 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
54435035 |
aatactatgtctaaaattgtcattccataattattaagaatggatttttgtttatgttttgattgtaccttttgttccttatatatcacaattgtattag |
54434936 |
T |
|
| Q |
366 |
tttggtatctaaattctaa----ttgtgagagttgagtccctgttttgatctcctggtagtgttattt |
429 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
54434935 |
tttggtctctaaattctaattatttatgagagttgagtccctattttgatctcctggtactgttattt |
54434868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 459 - 525
Target Start/End: Complemental strand, 54434869 - 54434804
Alignment:
| Q |
459 |
ttcctctttgattcatgattctaatcaaaattgtgatactttaattttcatgctccctctaattgtt |
525 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54434869 |
ttcctctttgattcatgattctaatcaag-ttgtgatactttaattttcatgctccctctaattgtt |
54434804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 600
Target Start/End: Complemental strand, 54434820 - 54434762
Alignment:
| Q |
544 |
tgctccctctaattgtgaatgtgtgtat--ggactttttagaccaagtaagcaagcacc |
600 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54434820 |
tgctccctctaattgttgatgcgtgtatatggactttttagaccaagtaagcaagcacc |
54434762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 13010942 - 13010897
Alignment:
| Q |
30 |
tatgaagcttttgaaatttcaattaaagaaacatttgacaaattgg |
75 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13010942 |
tatgaatcttttgaaacttcaattaaagaaacatttgacaaattgg |
13010897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University