View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17181_low_2 (Length: 250)

Name: NF17181_low_2
Description: NF17181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17181_low_2
NF17181_low_2
[»] chr4 (5 HSPs)
chr4 (16-151)||(1845751-1845886)
chr4 (153-248)||(1845915-1846010)
chr4 (94-143)||(21027915-21027964)
chr4 (96-154)||(53979022-53979080)
chr4 (100-153)||(52450176-52450229)
[»] chr8 (4 HSPs)
chr8 (90-151)||(43561965-43562026)
chr8 (96-154)||(22842156-22842214)
chr8 (95-154)||(33102107-33102166)
chr8 (95-170)||(38006541-38006618)
[»] chr6 (2 HSPs)
chr6 (90-154)||(2725846-2725910)
chr6 (98-154)||(23252892-23252948)
[»] chr2 (3 HSPs)
chr2 (98-154)||(13387327-13387383)
chr2 (95-153)||(33833454-33833511)
chr2 (98-154)||(39556020-39556075)
[»] chr7 (2 HSPs)
chr7 (95-154)||(41909362-41909420)
chr7 (95-152)||(3756382-3756439)
[»] chr5 (2 HSPs)
chr5 (96-151)||(9979680-9979735)
chr5 (157-215)||(28228903-28228961)
[»] chr1 (5 HSPs)
chr1 (106-153)||(12216184-12216231)
chr1 (90-147)||(29855929-29855986)
chr1 (153-206)||(50899057-50899110)
chr1 (90-154)||(21322571-21322635)
chr1 (90-134)||(32827726-32827770)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 1845751 - 1845886
Alignment:
Q  16 gtactcaatcatgggacaagatgtaaccgaaggagcgatatggaaggcttggtcaacatgcataaaaatatgaatactactcttctcctatctgtttttt 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1845751 gtactcaatcatgggacaagatgtaaacgaaggagcgatatggaaggcttggtcaacatgcataaaaatatgaatactactcttctcctatctgtttttt 1845850  T
Q  116 ctcattcctgtcaatatagtcaagcgtgagttaact 151  Q
    |||||||| |||||||||||||||||||||||||||    
T  1845851 ctcattcccgtcaatatagtcaagcgtgagttaact 1845886  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 1845915 - 1846010
Alignment:
Q  153 actcacgcatgtgtatttctcagcatcaatgaacaaaaacagttgggagaagagtgattctctaaaaatatgcagaaagaggggaatggttatcaa 248  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1845915 actcacgcatgtgtatttctcagcagcaatgagcaaaaacagttgggagaagagtgattctctaaaaatatgcagaaagaggggaatggttatcaa 1846010  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 21027964 - 21027915
Alignment:
Q  94 actcttctcctatctgttttttctcattcctgtcaatatagtcaagcgtg 143  Q
    |||||||||| |||||||||| |||||||||||||| |||| ||||||||    
T  21027964 actcttctcccatctgtttttgctcattcctgtcaaaatagccaagcgtg 21027915  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 53979022 - 53979080
Alignment:
Q  96 tcttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaactcac 154  Q
    ||||| || |||||||||| ||||||||||| || |||||| | |||||||||||||||    
T  53979022 tcttcccccatctgtttttgctcattcctgttaaaatagtcgaacgtgagttaactcac 53979080  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 52450229 - 52450176
Alignment:
Q  100 ctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaactca 153  Q
    |||| |||||||||| |||||||| ||||| |||| | ||||||||||||||||    
T  52450229 ctcccatctgtttttactcattcccgtcaaaatagccgagcgtgagttaactca 52450176  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 43561965 - 43562026
Alignment:
Q  90 tactactcttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaact 151  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||||||||    
T  43561965 tactactcttctcctatccgttttttctcattcccgtcaaaatagtcaagcgtaagttaact 43562026  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 22842156 - 22842214
Alignment:
Q  96 tcttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaactcac 154  Q
    |||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||||||    
T  22842156 tcttctcccatctgttttttctcattcccgtcaaaatagtcgagcgtgagttaactcac 22842214  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 33102166 - 33102107
Alignment:
Q  95 ctcttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaactcac 154  Q
    |||||||| ||||||||||| |||||||| ||||| |||| | |||||||||||||||||    
T  33102166 ctcttctcttatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaactcac 33102107  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 38006618 - 38006541
Alignment:
Q  95 ctcttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaa--ctcactcacgcatgtgtattt 170  Q
    ||||||||| |||||||||| |||||||| || || |||||| ||||||||||||  || ||||||| ||||||||||    
T  38006618 ctcttctcccatctgtttttgctcattcccgttaaaatagtcgagcgtgagttaatgctaactcacgtatgtgtattt 38006541  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 2725910 - 2725846
Alignment:
Q  90 tactactcttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaactcac 154  Q
    |||| ||||||||| |||||||||| |||||||| ||||| |||| | |||||||||||||||||    
T  2725910 tactgctcttctcccatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaactcac 2725846  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 23252948 - 23252892
Alignment:
Q  98 ttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaactcac 154  Q
    |||||| ||||| |||| |||||||| ||||| |||| | |||||||||||||||||    
T  23252948 ttctcccatctggttttgctcattcccgtcaaaatagccgagcgtgagttaactcac 23252892  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 13387327 - 13387383
Alignment:
Q  98 ttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaactcac 154  Q
    |||||| ||||||||||  ||||||| ||||| ||||||||||||||||||||||||    
T  13387327 ttctcccatctgtttttcttcattcccgtcaaaatagtcaagcgtgagttaactcac 13387383  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 33833511 - 33833454
Alignment:
Q  95 ctcttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaactca 153  Q
    ||||||||| |||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  33833511 ctcttctcccatctgtttttactcattcctgtcaa-atagccgagcgtgggttaactca 33833454  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 39556075 - 39556020
Alignment:
Q  98 ttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaactcac 154  Q
    |||||||||||| |||| |||||||| ||||| |||||| || ||||||||||||||    
T  39556075 ttctcctatctgattttgctcattcccgtcaa-atagtcgagtgtgagttaactcac 39556020  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 41909420 - 41909362
Alignment:
Q  95 ctcttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaactcac 154  Q
    ||||||||  ||||||||||||||||||| ||||| ||| |||||||| |||||||||||    
T  41909420 ctcttctctcatctgttttttctcattcccgtcaa-ataatcaagcgtaagttaactcac 41909362  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 3756382 - 3756439
Alignment:
Q  95 ctcttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaactc 152  Q
    ||||||||| || ||||||| |||||||| ||||| |||||| || ||||||||||||    
T  3756382 ctcttctcccatttgtttttgctcattcccgtcaaaatagtcgagtgtgagttaactc 3756439  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 9979735 - 9979680
Alignment:
Q  96 tcttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaact 151  Q
    |||||||| ||||||||||  |||||| |||||| |||||| ||||||||||||||    
T  9979735 tcttctcccatctgtttttgttcattcatgtcaaaatagtcgagcgtgagttaact 9979680  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 28228903 - 28228961
Alignment:
Q  157 acgcatgtgtatttctcagcatcaatgaacaaaaacagttgggagaagagtgattctct 215  Q
    ||||||||||||||||||||    |||||||||||||| |||||||||||  |||||||    
T  28228903 acgcatgtgtatttctcagcggagatgaacaaaaacagatgggagaagagcaattctct 28228961  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 12216231 - 12216184
Alignment:
Q  106 tctgttttttctcattcctgtcaatatagtcaagcgtgagttaactca 153  Q
    ||||||||| |||||||||||||| |||| |||| |||||||||||||    
T  12216231 tctgtttttgctcattcctgtcaaaatagccaagtgtgagttaactca 12216184  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 29855929 - 29855986
Alignment:
Q  90 tactactcttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagtt 147  Q
    ||||||||||| || |||||||||| ||||||||  |||| |||||| ||||||||||    
T  29855929 tactactcttcccccatctgtttttgctcattcccatcaaaatagtcgagcgtgagtt 29855986  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 50899110 - 50899057
Alignment:
Q  153 actcacgcatgtgtatttctcagcatcaatgaacaaaaacagttgggagaagag 206  Q
    ||||||||||||||||||||||||   ||||| ||||||||| || ||||||||    
T  50899110 actcacgcatgtgtatttctcagcggaaatgagcaaaaacagatgagagaagag 50899057  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 21322635 - 21322571
Alignment:
Q  90 tactactcttctcctatctgttttttctcattcctgtcaatatagtcaagcgtgagttaactcac 154  Q
    |||| ||||||||| |||||||||| |||| ||| ||||| |||| | || ||||||||||||||    
T  21322635 tactgctcttctcccatctgtttttgctcaatcccgtcaaaatagccgagggtgagttaactcac 21322571  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 32827726 - 32827770
Alignment:
Q  90 tactactcttctcctatctgttttttctcattcctgtcaatatag 134  Q
    |||| ||||||||| |||||||||| |||||||||||||| ||||    
T  32827726 tactgctcttctcccatctgtttttgctcattcctgtcaaaatag 32827770  T

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