View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17182_high_2 (Length: 547)
Name: NF17182_high_2
Description: NF17182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17182_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 27807506 - 27806975
Alignment:
| Q |
1 |
ctcaacatgattataatatacttcaatgcattaaaagactattttattattcaataaccataataactagaaaagtagacaaacgcaagcaatagaatgt |
100 |
Q |
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| T |
27807506 |
ctcaacatgattataatatacttcaatgcattaaaagactattttatttttcaataaccataataaccagaaaagtagacaaatgcaagcaatagaatgt |
27807407 |
T |
|
| Q |
101 |
ctccaaacatgattctaattcaaaatgagaaaatgtttataataagatccatgcaatctttaacacattttactatgattaactaatgtgaaagagagct |
200 |
Q |
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| T |
27807406 |
ctccaaacatgattctaattcaaaatgagaaaatgtttataataagatccatgcaatctttaacacattttactatgactaactaatgtgaaagagagct |
27807307 |
T |
|
| Q |
201 |
tatctcatcttcacgccaaatattttccaaggatccatgtggcattcttcttggatttctcgcaaacggattcttgcacctatggcatgttgttatttga |
300 |
Q |
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| T |
27807306 |
tatctcatcttcacgccaaatattttccaaggatccatgtggcattcttcttggatttctcgcaaatggattcttgcacctatggcttgttgttatttga |
27807207 |
T |
|
| Q |
301 |
caagtgataagcttgcatgagatattgacacgacttagcacatcatcaatcgagtataaatgaaacgcaccgtccactttatccacaataagactatggc |
400 |
Q |
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| T |
27807206 |
caagtgataagcttgcatgagatattgacacgacttagcacatcatcaatcgagtataaatgaaacgcaccgtccactttatccacaataagactatggc |
27807107 |
T |
|
| Q |
401 |
ttaagtttaccacctccaaatgttccaagttattaagcacgtgacataaacctcccatgttaactttcatcgttcgaatactcaaaacctttagatttag |
500 |
Q |
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| T |
27807106 |
ttaagtttaccacctccaaatgttccaagttattaagcacgtgacataaacctcccatgttaactttcatctttcgaatactcaaaacctttagatttgg |
27807007 |
T |
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| Q |
501 |
agtgcatttaaccaatgccctagcttcatatt |
532 |
Q |
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| T |
27807006 |
agtgcatttaaccaatgccctagcttcatatt |
27806975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 85 - 532
Target Start/End: Complemental strand, 27815161 - 27814714
Alignment:
| Q |
85 |
gcaagcaatagaatgtctccaaacatgattctaattcaaaatgagaaaatgtttataataagatccatgcaatctttaacacattttactatgattaact |
184 |
Q |
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|||| ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| |||||||| |||||| ||| || ||||| |
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| T |
27815161 |
gcaaacaataaaatgtctccaaacatgattctaaatcaaaatgagcaaatgtttataataagatcaatgcattctttaacccatttttctaggactaact |
27815062 |
T |
|
| Q |
185 |
aatgtgaaagagagcttatctcatcttcacgccaaatattttccaaggatccatgtggcattcttcttggatttctcgcaaacggattcttgcacctatg |
284 |
Q |
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| T |
27815061 |
aatgcgaaagagaccttatctcatcatcacgccaaatatcttccaaggtcccatgtggcattcttcttggatttctcgcaaatggagtcttgcaccaaag |
27814962 |
T |
|
| Q |
285 |
gcatgttgttatttgacaagtgataagcttgcatgagatattgacacgacttagcacatcatcaatcgagtataaatgaaacgcaccgtccactttatcc |
384 |
Q |
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| T |
27814961 |
gcatgttctaatttgacaagtgataagcttgcatgagttattgacacgactttgcacatcatcaaccgagtattgttgaagttcatcatccaatttatcc |
27814862 |
T |
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| Q |
385 |
acaataagactatggcttaagtttaccacctccaaatgttccaagttattaagcacgtgacataaacctcccatgttaactttcatcgttcgaatactca |
484 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |||||||||||| |
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| T |
27814861 |
acaataagactatggcttaaatttaccacctccaaatgttccaagttattaagtacatgacataaacctcccatgttaactgtcatgtttcgaatactca |
27814762 |
T |
|
| Q |
485 |
aaacctttagatttagagtgcatttaaccaatgccctagcttcatatt |
532 |
Q |
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||||||||| |||| ||||| | ||||||||||||||||||||||||| |
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| T |
27814761 |
aaacctttaaatttggagtgtagttaaccaatgccctagcttcatatt |
27814714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27815294 - 27815230
Alignment:
| Q |
1 |
ctcaacatgattataatatacttcaatgcattaaaagactattttattattcaataaccataata |
65 |
Q |
| |
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||||||||||||||||| |||||| || | ||||||||| ||||||| ||||||||| |||||| |
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| T |
27815294 |
ctcaacatgattataatctacttcgatacgataaaagactgttttatttttcaataactataata |
27815230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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