View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17182_high_3 (Length: 530)
Name: NF17182_high_3
Description: NF17182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17182_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Complemental strand, 4142882 - 4142364
Alignment:
| Q |
1 |
ttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcatcggacattaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142882 |
ttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcatcggacattaca |
4142783 |
T |
|
| Q |
101 |
atgttggaattaatattacaaataaattgtttcattattatttgtcttattataacatgggtttgtctaacatatatcctaaatgcagtggttatatgcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4142782 |
atgttggaattaatattacaaataaattgtttcattattatttgtcttattataatatgggtttgtctaatatatatcctaaatgcagtggttatatgcc |
4142683 |
T |
|
| Q |
201 |
accggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgttagtggacgaagaaatagtagc |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4142682 |
acctgaatatgcaatggaggggcttttctcagagaaatcagatgtctatagtttcggagttttattgctagagcttgttagtggacgaagaaatagtagc |
4142583 |
T |
|
| Q |
301 |
ttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatatactcgatgtctttattacatatactataatacaagaagtgttaacaata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142582 |
ttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatatagtcgatgtctttattacatatactataatacaagaagtgttaacaata |
4142483 |
T |
|
| Q |
401 |
cactttcaacacttaatg-----ttaaaatttgtgtgaactccactattctttgtgcgtcaagttttctatatcattcacattcgaagaacttacgcaaa |
495 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4142482 |
cactttcaacacttaatgttagtttaaaatttgtgtgaactccactattctttgtgcgtcaagttttcaatatcattcacattcgaagaacttacgcaaa |
4142383 |
T |
|
| Q |
496 |
ttttaaccaatattaaaag |
514 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4142382 |
ttttaaccaatattaaaag |
4142364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 3 - 414
Target Start/End: Complemental strand, 4150892 - 4150489
Alignment:
| Q |
3 |
ggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcatcggacattacaat |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||| ||| |
|
|
| T |
4150892 |
ggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtagtactatctcatttgatattataat |
4150793 |
T |
|
| Q |
103 |
gttggaattaatattacaaataaattgtttcattattatttgtcttattataacatgggtttgtc-taacatatatcctaaatgcagtggttatatgcca |
201 |
Q |
| |
|
|||||||||| | |||||||| | | |||| ||| |||||| | ||| | |||| || | |||||||| | |||||||||||||||||||||| |
|
|
| T |
4150792 |
gttggaattagtgttacaaatgagtggtttaatt-ttattttttttact------tggggttatagtaacatatgttctaaatgcagtggttatatgccg |
4150700 |
T |
|
| Q |
202 |
ccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgttagtggacgaagaaatagtagct |
301 |
Q |
| |
|
|| |||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||| ||||||| ||| ||||||| ||| ||||||||||||||| |
|
|
| T |
4150699 |
cctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctggagattgttagcggaagaagaaatagtagct |
4150600 |
T |
|
| Q |
302 |
tttatcacagcgaggattctcttagccttgtaggctttgtaagtttatatactcgatgtctttattacatatactataatacaagaagtgttaacaatac |
401 |
Q |
| |
|
||| ||| ||||||| |||||||||||||||||||||||||| || |||||| ||| ||| ||||| ||||||| | | |||||||||| |||||| |
|
|
| T |
4150599 |
tttctcatcacgaggatactcttagccttgtaggctttgtaagtctaaatactccatgccttcattac--atactatgagaaaagaagtgttggcaatac |
4150502 |
T |
|
| Q |
402 |
actttcaacactt |
414 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4150501 |
actttcaacactt |
4150489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 4120446 - 4120090
Alignment:
| Q |
1 |
ttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcatcggacattaca |
100 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| | |||||| | |
|
|
| T |
4120446 |
ttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaatcctatctcattgaacattata |
4120347 |
T |
|
| Q |
101 |
atgttggaattaatatt---acaaataaattgtttcattattatttgtcttattataacatgggtttgtctaacatatatcctaaatgcagtggttatat |
197 |
Q |
| |
|
|||||| |||| || | |||||| |||||||| || |||| | | |||||||||||| |||| |||||||||||||||||| |
|
|
| T |
4120346 |
ttgttgggattattaatgctacaaatgaattgtttaatcattactcctgttattataacat-------------atatgctttaaatgcagtggttatat |
4120260 |
T |
|
| Q |
198 |
gccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgttagtggacgaagaaatagt |
297 |
Q |
| |
|
||| || |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||| |||| ||||| |||||||||| |
|
|
| T |
4120259 |
gccgccagaatatgcaatggaggggcttttctctgagaaatcagatgtatatagctttggggttttattgctagagattgtcagtgggcgaagaaatacg |
4120160 |
T |
|
| Q |
298 |
agcttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatatactcgatgtctttatt |
367 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
4120159 |
agcttttatcacagcgaggattcacttagccttgtaggctttgtaagtttatatacgcaatgtctttatt |
4120090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 179 - 369
Target Start/End: Complemental strand, 4130359 - 4130169
Alignment:
| Q |
179 |
ctaaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgt |
278 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| ||| |||| |
|
|
| T |
4130359 |
ctaaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgt |
4130260 |
T |
|
| Q |
279 |
tagtggacgaagaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatatactcgatgtctttattac |
369 |
Q |
| |
|
|| ||||||||||||| ||||||||||| | |||||||||||||||||||| |||||||||||| ||| || || |||||| |||||| |
|
|
| T |
4130259 |
aagcggacgaagaaataacagcttttatcaaaatgaggattctcttagccttgttggctttgtaagtctatgtaatccatgtctctattac |
4130169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 179 - 351
Target Start/End: Complemental strand, 4159723 - 4159551
Alignment:
| Q |
179 |
ctaaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgt |
278 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| || ||||| || |||||||||||||| ||||| ||||||||||||||| | ||| |||| |
|
|
| T |
4159723 |
ctaaatgcagtggttatatgccgcctgaatatgcaatggaaggacttttttctgagaaatcagatgtttatagctttggagttttattgttagagattgt |
4159624 |
T |
|
| Q |
279 |
tagtggacgaagaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatat |
351 |
Q |
| |
|
||| || |||||||| ||||||||||| |||| ||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
4159623 |
tagcggccgaagaaacagtagcttttaccacaacgaagattctcttagccttgttggctttgtaagtatatat |
4159551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4130530 - 4130454
Alignment:
| Q |
1 |
ttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagta |
77 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4130530 |
ttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagta |
4130454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4159911 - 4159837
Alignment:
| Q |
1 |
ttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaag |
75 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
4159911 |
ttggtttagctagaattgttaaaggaggagaagatgatgaaacaaacacaaatagggttgttggaacttagtaag |
4159837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 2723579 - 2723496
Alignment:
| Q |
180 |
taaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
263 |
Q |
| |
|
|||||||||||| || ||| | ||||||||||||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
2723579 |
taaatgcagtggatacatgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttggggtttt |
2723496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 2745409 - 2745326
Alignment:
| Q |
180 |
taaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
263 |
Q |
| |
|
|||||||||||| || ||| | ||||||||||||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
2745409 |
taaatgcagtggatacatgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttggggtttt |
2745326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 2712039 - 2711956
Alignment:
| Q |
180 |
taaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
263 |
Q |
| |
|
|||||||||||| |||||| | || |||||||||||| | ||| | || ||||||||||||||| | | ||||||||||||||| |
|
|
| T |
2712039 |
taaatgcagtggatatatgtctccagaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagtttt |
2711956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 2716956 - 2716873
Alignment:
| Q |
180 |
taaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
263 |
Q |
| |
|
|||||||||||| || ||| | ||||||||||||||||| || | || ||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
2716956 |
taaatgcagtggatacatgtctccggaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggtttt |
2716873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 2704386 - 2704306
Alignment:
| Q |
183 |
atgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
263 |
Q |
| |
|
||||||||| |||||| | || ||||| |||||||||||| | || ||||||||||||||||| | ||| ||||| ||||| |
|
|
| T |
2704386 |
atgcagtggatatatgtctccagaatacgcaatggaggggttgttttcagagaaatcagatgtttttagctttggggtttt |
2704306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 345
Target Start/End: Original strand, 19939299 - 19939459
Alignment:
| Q |
182 |
aatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgttag |
281 |
Q |
| |
|
||||||||||||||||| | || |||||||||||| | || || || || || ||||| ||||||| ||| |||||||||||| | || ||| || |||| |
|
|
| T |
19939299 |
aatgcagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagttttacttcttgagattattag |
19939398 |
T |
|
| Q |
282 |
tggacgaagaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagt |
345 |
Q |
| |
|
|||| |||||||| ||||||||| || || || ||||||| |||| |||| ||||||||| |
|
|
| T |
19939399 |
tggaagaagaaattcaagcttttatgactgc---gactctcttacccttttaggatttgtaagt |
19939459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 345
Target Start/End: Original strand, 19970438 - 19970598
Alignment:
| Q |
182 |
aatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgttag |
281 |
Q |
| |
|
||||||||||||||||| | || |||||||||||| | || || || || || ||||| ||||||| ||| |||||||||||| | || ||| || |||| |
|
|
| T |
19970438 |
aatgcagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagttttacttcttgagattattag |
19970537 |
T |
|
| Q |
282 |
tggacgaagaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagt |
345 |
Q |
| |
|
|||| |||||||| ||||||||| || || || ||||||| |||| |||| ||||||||| |
|
|
| T |
19970538 |
tggaagaagaaattcaagcttttatgactgc---gactctcttacccttttaggatttgtaagt |
19970598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 20062461 - 20062380
Alignment:
| Q |
182 |
aatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
263 |
Q |
| |
|
||||||||||||||||| | || ||||| |||||| | || ||||| ||||||||||||||||| | ||| ||||| ||||| |
|
|
| T |
20062461 |
aatgcagtggttatatgtctcctgaatacgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgtttt |
20062380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 20289417 - 20289499
Alignment:
| Q |
181 |
aaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
263 |
Q |
| |
|
||||||||||||||||| | || ||||| |||||| | || || || ||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
20289417 |
aaatgcagtggttatatatctcccgaatacgcaatgcaaggactgttttcagagaaatcagatgtctttagctttggtgtttt |
20289499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 20285107 - 20285188
Alignment:
| Q |
182 |
aatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
263 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||| | || | || ||||||||||||||| | | ||||||||| ||||| |
|
|
| T |
20285107 |
aatgcagtggctatatgtctccggaatatgcaatgcaaggattattttcagagaaatcagatttttttagttttggtgtttt |
20285188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 40823734 - 40823652
Alignment:
| Q |
181 |
aaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
263 |
Q |
| |
|
|||||||| ||||||||| | || |||||||| ||| | || || || ||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
40823734 |
aaatgcagcggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgtctttagctttggtgtttt |
40823652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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