View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17182_high_6 (Length: 297)
Name: NF17182_high_6
Description: NF17182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17182_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 82 - 285
Target Start/End: Complemental strand, 45270194 - 45269991
Alignment:
| Q |
82 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcg |
181 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270194 |
aacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcg |
45270095 |
T |
|
| Q |
182 |
aggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcacta |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270094 |
aggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcacta |
45269995 |
T |
|
| Q |
282 |
cctt |
285 |
Q |
| |
|
|||| |
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| T |
45269994 |
cctt |
45269991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 45273825 - 45273553
Alignment:
| Q |
1 |
aagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45273825 |
aagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcag |
45273726 |
T |
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| Q |
101 |
agtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgaggctaccaaatacaccgc |
200 |
Q |
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| T |
45273725 |
agtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccgaggctaacaaattcacagc |
45273626 |
T |
|
| Q |
201 |
cagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcactacctt |
285 |
Q |
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||||||||||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||||||| |
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| T |
45273625 |
tggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
45273553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 45282069 - 45281797
Alignment:
| Q |
1 |
aagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282069 |
aagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcag |
45281970 |
T |
|
| Q |
101 |
agtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgaggctaccaaatacaccgc |
200 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||| ||| || |
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| T |
45281969 |
agtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccgaggctaacaaattcacagc |
45281870 |
T |
|
| Q |
201 |
cagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcactacctt |
285 |
Q |
| |
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||||||||||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||||||| |
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| T |
45281869 |
tggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
45281797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 45293409 - 45293186
Alignment:
| Q |
1 |
aagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcag |
100 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||| |
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| T |
45293409 |
aagacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggcaaggagaacattttgaaaacacatgttactatgcag |
45293310 |
T |
|
| Q |
101 |
agtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgaggctaccaaatacaccgc |
200 |
Q |
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|||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |||| |||||||||| |||||||||||||| ||| || |
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| T |
45293309 |
agtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctaccaaattcactgc |
45293210 |
T |
|
| Q |
201 |
cagtatatggctcgatgctggacc |
224 |
Q |
| |
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|| |||||||| | |||||||| |
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| T |
45293209 |
tggtttatggctccaagctggacc |
45293186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 45302369 - 45302146
Alignment:
| Q |
1 |
aagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcag |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||| |
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| T |
45302369 |
aagacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggcaaggagaacattttgaaaacacatgttactatgcag |
45302270 |
T |
|
| Q |
101 |
agtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgaggctaccaaatacaccgc |
200 |
Q |
| |
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|||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |||| |||||||||| |||||||||||||| ||| || |
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| T |
45302269 |
agtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctaccaaattcactgc |
45302170 |
T |
|
| Q |
201 |
cagtatatggctcgatgctggacc |
224 |
Q |
| |
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|| |||||||| | |||||||| |
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| T |
45302169 |
tggtttatggctccaagctggacc |
45302146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 45270283 - 45270217
Alignment:
| Q |
11 |
tcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaacaaaa |
77 |
Q |
| |
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||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||| || ||||||||| |
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| T |
45270283 |
tcatggaatccacaattggtgattttattcatcaagatggatggaccacttggccagaagaacaaaa |
45270217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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