View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17182_high_9 (Length: 220)
Name: NF17182_high_9
Description: NF17182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17182_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 36713411 - 36713598
Alignment:
| Q |
15 |
aatcataggagtcaaattaacatgttgacgttgcacaagaaactcttacgcggtaataagatttttggcacactcacaaaagagaaaatagatnnnnnnn |
114 |
Q |
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| T |
36713411 |
aatcataggagtcaaattaacatgttgacgttgcacaagaaactcttacgcggtaataagatttttggcacactcacaaaagagaaaatagat---aaaa |
36713507 |
T |
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| Q |
115 |
nnnnnnntgaataatgtgtatttttatgtgtttgtccaaaccttgtgaccaaaatctcgtgatcactcaagtatttttcgactttgtatgt |
205 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36713508 |
aaaagaatgaataatgtgtatttttatgtgtgtgtccaaaccttgtgatcaaaatctcgtgatcgctcaagtatttttcgactttgtatgt |
36713598 |
T |
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