View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17182_low_10 (Length: 245)
Name: NF17182_low_10
Description: NF17182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17182_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 7364050 - 7363834
Alignment:
| Q |
19 |
ttatatgtgaaaacaaatgtgtagtaatgtgctaaatacaagtatatgaaacgtggcctttagtgagtttgagctgctacttgtcatcatgaacaaggct |
118 |
Q |
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| T |
7364050 |
ttatatgtgaaaacaaatgtgtagtaatgtgctaaatacaagtatatgaaacgtggcccttagtgagtttgagctgctacttgtcatcatgaacaaggct |
7363951 |
T |
|
| Q |
119 |
aaccgtgtcaactattagccttactgttgatatatcttgtacacacttggcttaagcttttctatatagtttaattctcaagaacaaaattctcacttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7363950 |
aaccgtgtcaactattagccttactgttgatatatcttgtacacacttggcttaagcttttctatatagtttaattctcaagaacaaaattctcacttga |
7363851 |
T |
|
| Q |
219 |
tttccctttttcctttg |
235 |
Q |
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||||||||||||||||| |
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| T |
7363850 |
tttccctttttcctttg |
7363834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 26052613 - 26052779
Alignment:
| Q |
19 |
ttatatgtgaaaacaaatgtgtagtaatgtgctaaatacaagtatatgaaacgtggcctttagtgagtttgagctgctacttgtcatcatgaacaaggct |
118 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26052613 |
ttatatgtgaaaacaaatgtgtagtaatgtgctcaatacaagtatttgaaacgtggcccttagtgagtttgagctgctacttgtcatcatgaacaaggct |
26052712 |
T |
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| Q |
119 |
aaccgtgtcaactattagccttactgttgatatatcttgtacacacttggcttaagcttttctatat |
185 |
Q |
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| T |
26052713 |
aaccgtgtcaactattagccttattgttgatatatcttgtacacacttggcttaagcttttctatat |
26052779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 6171445 - 6171510
Alignment:
| Q |
26 |
tgaaaacaaatgtgtagtaatgtgctaaatacaagtatatgaaacgtggcctttagtgagtttgag |
91 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |
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| T |
6171445 |
tgaaaacaaatgtgtagtaatgtgttaaatacaagtatatgaaacatggcccttagtgagtttgag |
6171510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 32028134 - 32028259
Alignment:
| Q |
19 |
ttatatgtgaaaacaaatgtgtagtaatgtgctaaatacaagtatatgaaacgtggcctttagtgagtttgagctgctacttgtcatcatgaacaaggct |
118 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32028134 |
ttatatgtgaaaacaaatgtgtagtaatgtgctaaattcaagtatatgaaacgtggcccttagtgagtttgagctgctacttgtcatcatgaacaaggct |
32028233 |
T |
|
| Q |
119 |
aaccgtgtcaactattagccttactg |
144 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32028234 |
aaccgtgtcaactattagccttactg |
32028259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 25638867 - 25638914
Alignment:
| Q |
19 |
ttatatgtgaaaacaaatgtgtagtaatgtgctaaatacaagtatatg |
66 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25638867 |
ttatatgtgaaaacaaatgtgtagtaatgtgctaaatacaagtatatg |
25638914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 13858935 - 13858889
Alignment:
| Q |
65 |
tgaaacgtggcctttagtgagtttgagctgctacttgtcatcatgaa |
111 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||| |||| |
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| T |
13858935 |
tgaaacttggcccttagtgagtttgagctgctacttgtcatcttgaa |
13858889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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