View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17182_low_5 (Length: 440)

Name: NF17182_low_5
Description: NF17182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17182_low_5
NF17182_low_5
[»] chr4 (48 HSPs)
chr4 (312-430)||(42915105-42915225)
chr4 (312-431)||(36408090-36408210)
chr4 (312-431)||(36413213-36413333)
chr4 (313-431)||(4896387-4896507)
chr4 (118-164)||(4896387-4896433)
chr4 (314-359)||(31275284-31275329)
chr4 (315-359)||(5234360-5234404)
chr4 (124-164)||(51296070-51296110)
chr4 (375-431)||(3664709-3664767)
chr4 (324-424)||(5123488-5123588)
chr4 (314-431)||(30778152-30778271)
chr4 (109-164)||(39844136-39844191)
chr4 (397-431)||(24772735-24772769)
chr4 (397-431)||(28203459-28203493)
chr4 (315-431)||(28480427-28480545)
chr4 (315-431)||(28481301-28481419)
chr4 (315-431)||(28482176-28482294)
chr4 (397-431)||(36512906-36512940)
chr4 (397-431)||(38160746-38160780)
chr4 (314-360)||(51389453-51389499)
chr4 (311-431)||(55927048-55927170)
chr4 (124-164)||(23690369-23690409)
chr4 (312-360)||(31658056-31658104)
chr4 (126-158)||(37249053-37249085)
chr4 (116-164)||(42915104-42915152)
chr4 (312-356)||(47998734-47998778)
chr4 (315-359)||(51296066-51296110)
chr4 (313-360)||(1033285-1033332)
chr4 (372-431)||(28676100-28676159)
chr4 (397-431)||(10096715-10096749)
chr4 (397-431)||(12074124-12074158)
chr4 (397-431)||(16004299-16004333)
chr4 (397-431)||(24337329-24337363)
chr4 (313-359)||(46173675-46173721)
chr4 (397-431)||(46794474-46794508)
chr4 (397-431)||(53763784-53763818)
chr4 (372-431)||(54036475-54036536)
chr4 (323-360)||(10250541-10250578)
chr4 (315-360)||(15596533-15596578)
chr4 (118-159)||(32408356-32408397)
chr4 (115-164)||(36408088-36408137)
chr4 (115-164)||(36413211-36413260)
chr4 (312-353)||(36792477-36792518)
chr4 (312-360)||(4577701-4577749)
chr4 (313-353)||(31240793-31240833)
chr4 (394-430)||(34114087-34114123)
chr4 (374-422)||(34974528-34974576)
chr4 (313-360)||(48372112-48372160)
[»] scaffold0036 (1 HSPs)
scaffold0036 (313-431)||(18068-18187)
[»] chr5 (33 HSPs)
chr5 (314-430)||(11306763-11306879)
chr5 (312-360)||(2117526-2117574)
chr5 (312-360)||(9403650-9403698)
chr5 (316-356)||(12349926-12349966)
chr5 (313-425)||(5130264-5130379)
chr5 (318-431)||(28811492-28811607)
chr5 (312-359)||(33567125-33567172)
chr5 (372-431)||(13613910-13613971)
chr5 (372-431)||(41460180-41460241)
chr5 (316-431)||(125156-125273)
chr5 (111-164)||(2117520-2117573)
chr5 (303-424)||(12203218-12203340)
chr5 (323-360)||(39595411-39595448)
chr5 (323-360)||(43482502-43482539)
chr5 (313-431)||(20719902-20720022)
chr5 (124-164)||(28811566-28811606)
chr5 (315-431)||(10232563-10232682)
chr5 (314-431)||(19376020-19376139)
chr5 (397-431)||(12349845-12349879)
chr5 (372-431)||(14206453-14206514)
chr5 (118-164)||(20719902-20719948)
chr5 (397-431)||(21749273-21749307)
chr5 (315-431)||(24431507-24431625)
chr5 (397-431)||(40566190-40566224)
chr5 (315-360)||(9714024-9714069)
chr5 (119-164)||(40566104-40566149)
chr5 (375-424)||(4434542-4434593)
chr5 (372-431)||(6458832-6458892)
chr5 (312-360)||(19127261-19127309)
chr5 (124-164)||(20541240-20541280)
chr5 (312-360)||(26791270-26791318)
chr5 (313-360)||(37821027-37821075)
chr5 (307-359)||(42532255-42532307)
[»] chr2 (25 HSPs)
chr2 (314-431)||(11164264-11164383)
chr2 (312-431)||(36133038-36133159)
chr2 (312-431)||(13711125-13711246)
chr2 (312-360)||(3091878-3091926)
chr2 (318-431)||(12600112-12600227)
chr2 (330-431)||(39285917-39286020)
chr2 (315-431)||(29795500-29795618)
chr2 (312-431)||(22390216-22390337)
chr2 (124-164)||(29795574-29795614)
chr2 (372-431)||(14140285-14140344)
chr2 (373-424)||(27529600-27529651)
chr2 (119-158)||(39454135-39454174)
chr2 (109-164)||(44189963-44190018)
chr2 (397-431)||(1889211-1889245)
chr2 (315-353)||(5455342-5455380)
chr2 (314-422)||(12962459-12962569)
chr2 (397-431)||(14714050-14714084)
chr2 (126-164)||(36435819-36435857)
chr2 (314-421)||(39454135-39454242)
chr2 (323-360)||(2464274-2464311)
chr2 (124-157)||(6365331-6365364)
chr2 (304-431)||(32750062-32750191)
chr2 (124-157)||(34442258-34442291)
chr2 (375-424)||(39737637-39737686)
chr2 (303-360)||(44189962-44190019)
[»] chr3 (35 HSPs)
chr3 (315-431)||(29705967-29706085)
chr3 (312-360)||(11173587-11173635)
chr3 (314-431)||(47849736-47849853)
chr3 (313-424)||(32687846-32687960)
chr3 (314-360)||(46953086-46953132)
chr3 (314-359)||(7231894-7231939)
chr3 (323-431)||(31249218-31249329)
chr3 (124-158)||(34733187-34733221)
chr3 (397-431)||(49196760-49196794)
chr3 (312-353)||(108574-108615)
chr3 (315-431)||(32457642-32457762)
chr3 (313-424)||(46473199-46473312)
chr3 (314-431)||(6126518-6126638)
chr3 (372-431)||(22813136-22813196)
chr3 (119-159)||(47849813-47849853)
chr3 (116-164)||(52727333-52727381)
chr3 (313-360)||(20380776-20380823)
chr3 (312-359)||(49196834-49196881)
chr3 (397-431)||(14957900-14957934)
chr3 (397-431)||(28300350-28300384)
chr3 (397-431)||(32536805-32536839)
chr3 (313-359)||(37303521-37303567)
chr3 (397-431)||(46953010-46953044)
chr3 (397-431)||(49130918-49130952)
chr3 (315-360)||(28300535-28300580)
chr3 (312-353)||(31997947-31997988)
chr3 (119-164)||(41111960-41112005)
chr3 (373-431)||(41309064-41309124)
chr3 (312-360)||(55344181-55344230)
chr3 (124-164)||(29706041-29706081)
chr3 (315-359)||(34733183-34733227)
chr3 (374-422)||(41957588-41957636)
chr3 (397-433)||(42102299-42102335)
chr3 (372-424)||(48179001-48179053)
chr3 (313-353)||(51464153-51464193)
[»] chr1 (29 HSPs)
chr1 (312-360)||(49453614-49453662)
chr1 (373-431)||(27687468-27687526)
chr1 (372-431)||(31703426-31703485)
chr1 (315-431)||(40610293-40610411)
chr1 (315-360)||(2362506-2362551)
chr1 (312-431)||(37843321-37843439)
chr1 (325-360)||(36418216-36418251)
chr1 (314-431)||(46948043-46948162)
chr1 (372-424)||(19651481-19651533)
chr1 (313-356)||(28716284-28716327)
chr1 (372-431)||(36930702-36930761)
chr1 (336-431)||(37690482-37690576)
chr1 (117-164)||(49453615-49453662)
chr1 (397-431)||(8391311-8391345)
chr1 (397-431)||(10384592-10384626)
chr1 (397-431)||(17526484-17526518)
chr1 (397-431)||(43755651-43755685)
chr1 (372-431)||(45042325-45042386)
chr1 (397-431)||(48872924-48872958)
chr1 (314-360)||(51571563-51571609)
chr1 (323-360)||(11460931-11460968)
chr1 (323-356)||(27687419-27687452)
chr1 (323-360)||(33676038-33676075)
chr1 (312-353)||(48872837-48872878)
chr1 (312-359)||(14002627-14002675)
chr1 (312-360)||(22389412-22389459)
chr1 (375-431)||(25988935-25988991)
chr1 (397-433)||(36794677-36794713)
chr1 (124-164)||(40610367-40610407)
[»] chr6 (18 HSPs)
chr6 (294-431)||(1897750-1897888)
chr6 (312-431)||(32253844-32253966)
chr6 (315-431)||(32853033-32853151)
chr6 (117-164)||(1897824-1897871)
chr6 (372-431)||(31480782-31480841)
chr6 (125-164)||(2582800-2582839)
chr6 (116-157)||(10628425-10628466)
chr6 (312-356)||(2241712-2241756)
chr6 (312-360)||(2582799-2582847)
chr6 (312-352)||(10628425-10628465)
chr6 (313-431)||(31517067-31517187)
chr6 (116-164)||(34021057-34021105)
chr6 (314-352)||(1434564-1434602)
chr6 (397-431)||(28883719-28883753)
chr6 (397-431)||(32457225-32457259)
chr6 (372-422)||(3179949-3180001)
chr6 (117-154)||(30906549-30906586)
chr6 (315-359)||(30733147-30733191)
[»] chr7 (34 HSPs)
chr7 (304-360)||(12142021-12142077)
chr7 (116-164)||(48866815-48866863)
chr7 (314-359)||(6353867-6353912)
chr7 (312-431)||(48866816-48866937)
chr7 (312-360)||(8792486-8792534)
chr7 (397-431)||(43213372-43213406)
chr7 (315-360)||(10591289-10591334)
chr7 (312-431)||(46651736-46651857)
chr7 (323-359)||(32428206-32428242)
chr7 (323-359)||(32933685-32933721)
chr7 (313-431)||(37351877-37351997)
chr7 (316-359)||(21839023-21839066)
chr7 (314-431)||(30180571-30180690)
chr7 (119-158)||(30180651-30180690)
chr7 (124-159)||(37856074-37856109)
chr7 (372-431)||(43025873-43025932)
chr7 (312-359)||(43445545-43445592)
chr7 (315-431)||(5978643-5978761)
chr7 (397-431)||(11778643-11778677)
chr7 (372-422)||(17157208-17157258)
chr7 (397-431)||(17500761-17500795)
chr7 (397-431)||(17552419-17552453)
chr7 (397-431)||(30862700-30862734)
chr7 (314-360)||(33684817-33684863)
chr7 (118-164)||(34348914-34348960)
chr7 (372-431)||(41254840-41254901)
chr7 (323-360)||(7077650-7077687)
chr7 (312-353)||(7807199-7807240)
chr7 (312-360)||(47945120-47945169)
chr7 (312-360)||(47950550-47950599)
chr7 (399-431)||(2790241-2790273)
chr7 (124-164)||(21839026-21839066)
chr7 (313-353)||(43260135-43260175)
chr7 (372-431)||(44894420-44894480)
[»] scaffold0115 (1 HSPs)
scaffold0115 (313-360)||(15076-15123)
[»] chr8 (34 HSPs)
chr8 (323-431)||(7678796-7678906)
chr8 (314-360)||(21273598-21273644)
chr8 (313-431)||(42543367-42543486)
chr8 (124-164)||(5359476-5359516)
chr8 (116-164)||(26294314-26294362)
chr8 (116-164)||(26307571-26307619)
chr8 (315-358)||(9046960-9047003)
chr8 (372-431)||(26871110-26871169)
chr8 (313-360)||(43403921-43403968)
chr8 (314-360)||(1179513-1179559)
chr8 (303-424)||(13924082-13924204)
chr8 (373-431)||(21418539-21418599)
chr8 (312-431)||(23258096-23258217)
chr8 (311-359)||(295684-295732)
chr8 (315-359)||(5359476-5359520)
chr8 (312-360)||(26294313-26294361)
chr8 (312-360)||(26307570-26307618)
chr8 (380-424)||(34970278-34970322)
chr8 (318-358)||(44672125-44672165)
chr8 (375-431)||(32175018-32175076)
chr8 (313-352)||(40413250-40413289)
chr8 (397-431)||(426165-426199)
chr8 (397-431)||(3988969-3989003)
chr8 (126-164)||(7678870-7678908)
chr8 (372-431)||(16011863-16011924)
chr8 (318-360)||(18538515-18538557)
chr8 (397-431)||(28473518-28473552)
chr8 (397-431)||(41406829-41406863)
chr8 (323-360)||(27673002-27673039)
chr8 (119-164)||(37524316-37524361)
chr8 (397-430)||(40604678-40604711)
chr8 (312-360)||(5502499-5502547)
chr8 (397-429)||(27836246-27836278)
chr8 (313-353)||(30925541-30925581)
[»] scaffold0057 (2 HSPs)
scaffold0057 (124-164)||(39017-39057)
scaffold0057 (315-359)||(39017-39061)
[»] scaffold0054 (1 HSPs)
scaffold0054 (372-431)||(31546-31607)
[»] scaffold0002 (1 HSPs)
scaffold0002 (397-431)||(6491-6525)
[»] scaffold0018 (1 HSPs)
scaffold0018 (313-360)||(36138-36186)
[»] scaffold0449 (2 HSPs)
scaffold0449 (397-431)||(7912-7946)
scaffold0449 (312-352)||(7976-8016)
[»] scaffold0060 (1 HSPs)
scaffold0060 (372-431)||(6881-6942)
[»] scaffold0508 (1 HSPs)
scaffold0508 (312-353)||(11422-11463)
[»] scaffold0026 (1 HSPs)
scaffold0026 (119-164)||(113763-113808)


Alignment Details
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 430
Target Start/End: Original strand, 42915105 - 42915225
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatgg--agagaaaaatga 409  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||           ||||||| ||||||||||  |||| |  ||||||||| ||    
T  42915105 aaagagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcattggttaaaaacaatagaaagagaaaaagga 42915204  T
Q  410 agagagagaataagagtataa 430  Q
    |||||||||||||||||||||    
T  42915205 agagagagaataagagtataa 42915225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 431
Target Start/End: Original strand, 36408090 - 36408210
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagaga-aaaatgaa 410  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||            ||||||| ||| ||||||  ||||||||||| |||| |||    
T  36408090 aaagagtggtgatatttgaacaactatttgatacaacttttgtgacaatttcttttttttctcttttcattagttaaaaacaatggagagagaaaaagaa 36408189  T
Q  411 gagagagaataagagtataat 431  Q
    |||||||||||||||||||||    
T  36408190 gagagagaataagagtataat 36408210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 431
Target Start/End: Original strand, 36413213 - 36413333
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagaga-aaaatgaa 410  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||            ||||||| ||| ||||||  ||||||||||| |||| |||    
T  36413213 aaagagtggtgatatttgaacaactatttgatacaacttttgtgacaatttcttttttttctcttttcattagttaaaaacaatggagagagaaaaagaa 36413312  T
Q  411 gagagagaataagagtataat 431  Q
    |||||||||||||||||||||    
T  36413313 gagagagaataagagtataat 36413333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 431
Target Start/End: Original strand, 4896387 - 4896507
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatgaa 410  Q
    ||||||||| ||||||||||| |||||||| |||||||||||||||||           ||||||| |||||| |||  |||||  |||||||||| |||    
T  4896387 aagagtagtgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggtcaaaaacaatggagagagaaaaaggaa 4896486  T
Q  411 gagagagaataagagtataat 431  Q
    ||||||||||| |||||||||    
T  4896487 gagagagaataggagtataat 4896507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 4896387 - 4896433
Alignment:
Q  118 aagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  4896387 aagagtagtgatatttgaacatctatttgaaacaacttttgtgacaa 4896433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 359
Target Start/End: Complemental strand, 31275329 - 31275284
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||    
T  31275329 agagtagtgatatttgaacaaccatttgatacaacttttgtgacaa 31275284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 5234360 - 5234404
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||    
T  5234360 gagtagtgatatttgaacaaccatttgatacaacttttgtgacaa 5234404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 51296070 - 51296110
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  51296070 agtgatatttgaacatctatttgaaacaacttttgtgacaa 51296110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 3664709 - 3664767
Alignment:
Q  375 ttttaattggttaaatgcaatggaga--gaaaaatgaagagagagaataagagtataat 431  Q
    |||| ||||||||||  |||||||||  |||||||||||||||||||||||||||||||    
T  3664709 tttttattggttaaaaacaatggagaaagaaaaatgaagagagagaataagagtataat 3664767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 5123488 - 5123588
Alignment:
Q  324 tatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagagaaaaatgaagagagagaataag 423  Q
    |||||||||||| || ||| |||||||||||||||||           |||||||||||||| ||||  |||||||||||||| |||||| |||||||||    
T  5123488 tatttgaacaaccatatgagacaacttttgtgacaacttattttttctctcttttaattggtcaaatataatggagagaaaaaagaagagggagaataag 5123587  T
Q  424 a 424  Q
    |    
T  5123588 a 5123588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 431
Target Start/End: Original strand, 30778152 - 30778271
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagaga--aaaatgaag 411  Q
    |||||| | |||||||||||||||||||||| ||||||| ||||||            ||||||| ||||||||||  |||||||||||  |||| ||||    
T  30778152 agagtaatgatatttgaacaactatttgatataacttttatgacaatttcttttttctctctttttattggttaaaaacaatggagagagaaaaaggaag 30778251  T
Q  412 agagagaataagagtataat 431  Q
    ||||| ||||||||||||||    
T  30778252 agagataataagagtataat 30778271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 39844136 - 39844191
Alignment:
Q  109 atttttcaaaagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||| ||| |||||||||||||||||||||| |||| ||||||||| ||||||    
T  39844136 atttttctaaacaggagtgatatttgaacatctaattgagacaacttttttaacaa 39844191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 24772769 - 24772735
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||||||||||    
T  24772769 gagagaaaaatgaagagagagaataagagtataat 24772735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 28203493 - 28203459
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||||||||||    
T  28203493 gagagaaaaatgaagagagagaataagagtataat 28203459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 28480427 - 28480545
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatgaaga 412  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||           ||||||| ||||||||||  || ||  |||||||||| |||||    
T  28480427 gagtagtgatatttgaacaactatttgagacaactattgtgacaacttcttttctctctcttttcattggttaaacacattggagagagaaaaaagaaga 28480526  T
Q  413 gagagaataagagtataat 431  Q
    ||||||| ||||| |||||    
T  28480527 gagagaacaagaggataat 28480545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 28481301 - 28481419
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatgaaga 412  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||           ||||||| ||||||||||  || ||  |||||||||| |||||    
T  28481301 gagtagtgatatttgaacaactatttgagacaactattgtgacaacttcttttctctctcttttcattggttaaacacattggagagagaaaaaagaaga 28481400  T
Q  413 gagagaataagagtataat 431  Q
    ||||||| ||||| |||||    
T  28481401 gagagaacaagaggataat 28481419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 28482176 - 28482294
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatgaaga 412  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||           ||||||| ||||||||||  || ||  |||||||||| |||||    
T  28482176 gagtagtgatatttgaacaactatttgagacaactattgtgacaacttcttttctctctcttttcattggttaaacacattggagagagaaaaaagaaga 28482275  T
Q  413 gagagaataagagtataat 431  Q
    ||||||| ||||| |||||    
T  28482276 gagagaacaagaggataat 28482294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 36512940 - 36512906
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||||||||||    
T  36512940 gagagaaaaatgaagagagagaataagagtataat 36512906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 38160746 - 38160780
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||||||||||    
T  38160746 gagagaaaaatgaagagagagaataagagtataat 38160780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 51389499 - 51389453
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||||    
T  51389499 agagcagtgatatttgaacaaccatttgatacaacttttgtgacaac 51389453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 431
Target Start/End: Complemental strand, 55927170 - 55927048
Alignment:
Q  311 caaagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatg 408  Q
    ||||||||||| ||||||||||| | |||||| |||| |||||||||||            ||||||| |||||| |||  |||||  |||||||||| |    
T  55927170 caaagagtagtgatatttgaacatccatttgagacaatttttgtgacaatttcttttctctctcttttcattggtcaaaaacaatgaagagagaaaaaag 55927071  T
Q  409 aagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||    
T  55927070 aagagagagaataagagtataat 55927048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 23690409 - 23690369
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  23690409 agtgatatttgaacatctatttgaaacaatttttgtgacaa 23690369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 31658104 - 31658056
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||||  ||||||||||||| |||||||||| |||||||||||||    
T  31658104 aaagagtagcgatatttgaacaaccatttgatacagcttttgtgacaac 31658056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 37249085 - 37249053
Alignment:
Q  126 tgatatttgaacatctatttgaaacaacttttg 158  Q
    |||||||||||||||||||||||||||||||||    
T  37249085 tgatatttgaacatctatttgaaacaacttttg 37249053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 42915104 - 42915152
Alignment:
Q  116 aaaagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||| ||||    
T  42915104 aaaagagtagtgatatttgaacaactatttgatacaacttttgtgacaa 42915152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 47998778 - 47998734
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtga 356  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||    
T  47998778 aaagagtagtgatatttgaacaatcatttgatacaacttttgtga 47998734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 51296066 - 51296110
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||    
T  51296066 gagtagtgatatttgaacatctatttgaaacaacttttgtgacaa 51296110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 1033332 - 1033285
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||||| ||||||||||||| |||| | |||||||||||||||||    
T  1033332 aagagtagtgatatttgaacaaccattttaaacaacttttgtgacaac 1033285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 28676100 - 28676159
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagagaaaaatgaagagagagaataagagtataat 431  Q
    ||||||| |||||| |||  ||||||||||||||| ||||||||||| ||||| ||||||    
T  28676100 ctcttttcattggtcaaaaacaatggagagaaaaaggaagagagagagtaagaatataat 28676159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 10096715 - 10096749
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||| ||||||    
T  10096715 gagagaaaaatgaagagagagaataagaatataat 10096749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 12074124 - 12074158
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  12074124 gagagaaaaaagaagagagagaataagagtataat 12074158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 16004299 - 16004333
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  16004299 gagagaaaaaagaagagagagaataagagtataat 16004333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 24337329 - 24337363
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||| ||||||||||||||||    
T  24337329 gagagaaaaatgaagagaaagaataagagtataat 24337363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 46173721 - 46173675
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    ||||||| | ||||||||| ||| |||||||||||||||||||||||    
T  46173721 aagagtaatgatatttgaataaccatttgatacaacttttgtgacaa 46173675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 46794474 - 46794508
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  46794474 gagagaaaaaggaagagagagaataagagtataat 46794508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 53763784 - 53763818
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||| ||||||    
T  53763784 gagagaaaaatgaagagagagaataagaatataat 53763818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 54036475 - 54036536
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagaga--aaaatgaagagagagaataagagtataat 431  Q
    ||||||| ||||||||||  |||||||||||  |||| |||||||||||||||||| |||||    
T  54036475 ctcttttcattggttaaaaacaatggagagagaaaaaggaagagagagaataagagaataat 54036536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 10250578 - 10250541
Alignment:
Q  323 atatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  10250578 atatttgaacaactattttttacaacttttgtgacaac 10250541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 15596578 - 15596533
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||| ||||||||||||| |||| | |||||||||||||||||    
T  15596578 gagtagtgatatttgaacaaccattttaaacaacttttgtgacaac 15596533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 32408356 - 32408397
Alignment:
Q  118 aagaggagtgatatttgaacatctatttgaaacaacttttgt 159  Q
    ||||| ||||||||||||||||| |||||||| |||||||||    
T  32408356 aagagtagtgatatttgaacatcaatttgaaataacttttgt 32408397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 36408088 - 36408137
Alignment:
Q  115 caaaagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||||  |||||||||||||| |||||||| ||||||||||| ||||    
T  36408088 caaaagagtggtgatatttgaacaactatttgatacaacttttgtgacaa 36408137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 36413211 - 36413260
Alignment:
Q  115 caaaagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||||  |||||||||||||| |||||||| ||||||||||| ||||    
T  36413211 caaaagagtggtgatatttgaacaactatttgatacaacttttgtgacaa 36413260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 36792518 - 36792477
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttg 353  Q
    |||||||||| ||||||||||||| |||| ||||||||||||    
T  36792518 aaagagtagtgatatttgaacaaccatttcatacaacttttg 36792477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 4577749 - 4577701
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||| | |||||||||||||| |||| ||||||||||| ||||||    
T  4577749 aaagagtaatgatatttgaacaactttttgctacaacttttgggacaac 4577701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 31240833 - 31240793
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttg 353  Q
    ||||||||| ||||||||||||| |||| ||||||||||||    
T  31240833 aagagtagtgatatttgaacaaccatttcatacaacttttg 31240793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 34114087 - 34114123
Alignment:
Q  394 atggagagaaaaatgaagagagagaataagagtataa 430  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  34114087 atggagagaaaaatgaagagagagaatgagaatataa 34114123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 34974576 - 34974528
Alignment:
Q  374 cttttaattggttaaatgcaatggagagaaaaatgaagagagagaataa 422  Q
    ||||| |||||| |||  ||||||||||||||| |||||||||||||||    
T  34974576 cttttcattggtcaaaaacaatggagagaaaaaagaagagagagaataa 34974528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 48372112 - 48372160
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaactttt-gtgacaac 360  Q
    ||||||||| |||||||||||||||||| |||||| |||| ||||||||    
T  48372112 aagagtagtgatatttgaacaactatttcatacaatttttagtgacaac 48372160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 431
Target Start/End: Complemental strand, 18187 - 18068
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagag--aaaaatgaa 410  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||           ||||||| ||||||||||  ||||||||||  |||||||||    
T  18187 aagagtagtgatatttgaacaactatttgatacaacttttatgacaac-ttttttttctctcttttcattggttaaaaacaatggagagataaaaatgaa 18089  T
Q  411 gagagagaataagagtataat 431  Q
    |||||||||||||||||||||    
T  18088 gagagagaataagagtataat 18068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 430
Target Start/End: Complemental strand, 11306879 - 11306763
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagagaaaaatgaagag 413  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||           ||||||| ||||||||||  |||| ||||||||||| ||||     
T  11306879 agagtagtgatatttgaacaactatttgatacaacttttgagacaacttcttttttctctcttttcattggttaaaaacaatagagagaaaaataaagat 11306780  T
Q  414 agagaataagagtataa 430  Q
    |||||||||||||||||    
T  11306779 agagaataagagtataa 11306763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 2117526 - 2117574
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2117526 aaagagtagtgatatttgaacaactatttgatacaacttttgtgacaac 2117574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 9403698 - 9403650
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  9403698 aaagagtagtgatatttaaacaaccatttgatacaacttttgtgacaac 9403650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 12349966 - 12349926
Alignment:
Q  316 agtagtaatatttgaacaactatttgatacaacttttgtga 356  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  12349966 agtagtgatatttgaacaactatttgatacaacttttgtga 12349926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 425
Target Start/End: Original strand, 5130264 - 5130379
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaa-cttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatga 409  Q
    ||||||||| |||||||||||||||||| ||||||  ||||||||||||           ||||||| ||||||||||  |||||  |||||||||| ||    
T  5130264 aagagtagtgatatttgaacaactatttcatacaattttttgtgacaacttcttttttctctcttttcattggttaaaaacaatggagagagaaaaagga 5130363  T
Q  410 agagagagaataagag 425  Q
    ||||||||||||||||    
T  5130364 agagagagaataagag 5130379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 431
Target Start/End: Complemental strand, 28811607 - 28811492
Alignment:
Q  318 tagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagaga--aaaatgaagagag 415  Q
    |||| ||||||||| | |||||||| |||||||||||||||||           ||||||| |||||| |||  |||||||||||  |||| ||||||||    
T  28811607 tagtgatatttgaatatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggtcaaaaacaatggagagagaaaaaagaagagag 28811508  T
Q  416 agaataagagtataat 431  Q
    ||||||||||||||||    
T  28811507 agaataagagtataat 28811492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 33567125 - 33567172
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    |||||||||| |||| |||||||| |||||||||||||||||||||||    
T  33567125 aaagagtagtgatatatgaacaaccatttgatacaacttttgtgacaa 33567172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 13613910 - 13613971
Alignment:
Q  372 ctcttttaattggttaaatgcaatggaga--gaaaaatgaagagagagaataagagtataat 431  Q
    ||||||| ||||||||||  |||||||||  ||||||||||||||||||||||||| |||||    
T  13613910 ctcttttcattggttaaaaacaatggagagagaaaaatgaagagagagaataagaggataat 13613971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 41460241 - 41460180
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagaga--aaaatgaagagagagaataagagtataat 431  Q
    ||||||| ||||||||||  |||||||||||  |||||||||||||||||||||| ||||||    
T  41460241 ctcttttcattggttaaaaacaatggagagagaaaaatgaagagagagaataagaatataat 41460180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 431
Target Start/End: Complemental strand, 125273 - 125156
Alignment:
Q  316 agtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagag--aaaaatgaagag 413  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||           ||||||| |||||| |||  |||| |||||  ||||| ||||||    
T  125273 agtagtgatatttgaacaaccatttgatacaacttttgcgacaacttcttttttctctcttttcattggtcaaaaacaatagagagaaaaaaaggaagag 125174  T
Q  414 agagaataagagtataat 431  Q
    |||||||||||| |||||    
T  125173 agagaataagagaataat 125156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 2117520 - 2117573
Alignment:
Q  111 ttttcaaaagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    |||| ||||||| ||||||||||||||| |||||||| ||||||||||| ||||    
T  2117520 ttttaaaaagagtagtgatatttgaacaactatttgatacaacttttgtgacaa 2117573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 424
Target Start/End: Complemental strand, 12203340 - 12203218
Alignment:
Q  303 catttttccaaagagtagtaatatttgaacaact-atttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagag 401  Q
    |||||||| || ||||| ||||||||||||||||  |||| |||||||||||||||||            ||||| | ||||||||||  |||| |||||    
T  12203340 catttttctaatgagtaataatatttgaacaactcttttggtacaacttttgtgacaatcttgttgtcctctcttctcattggttaaaaccaatagagag 12203241  T
Q  402 aaaaatgaagagagagaataaga 424  Q
    ||||| |||||||||||||||||    
T  12203240 aaaaaagaagagagagaataaga 12203218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 39595448 - 39595411
Alignment:
Q  323 atatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  39595448 atatttgaacaaccatttgatacaacttttgtgacaac 39595411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 43482539 - 43482502
Alignment:
Q  323 atatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  43482539 atatttgaacaactatttgatacaatttttgtgacaac 43482502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 431
Target Start/End: Original strand, 20719902 - 20720022
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatgaa 410  Q
    ||||||||| ||||||||||| | |||||| |||||||||||||||||           ||||||| |||||| |||   ||||  ||||||||||  ||    
T  20719902 aagagtagtgatatttgaacatccatttgagacaacttttgtgacaacttcttttctctctcttttcattggtcaaaaataatggagagagaaaaagaaa 20720001  T
Q  411 gagagagaataagagtataat 431  Q
    |||||||||||||||||||||    
T  20720002 gagagagaataagagtataat 20720022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 28811606 - 28811566
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  28811606 agtgatatttgaatatctatttgaaacaacttttgtgacaa 28811566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 431
Target Start/End: Complemental strand, 10232682 - 10232563
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaactttt-gtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatgaag 411  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||||           ||||||| ||||||||||   ||||  |||||||||| ||||    
T  10232682 gagtagtgatatttgaacaactattttatacaacttttggtgacaacttcttttttctctcttttcattggttaaaattaatggagagagaaaaaggaag 10232583  T
Q  412 agagagaataagagtataat 431  Q
    ||||||||||| || |||||    
T  10232582 agagagaataaaaggataat 10232563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 431
Target Start/End: Original strand, 19376020 - 19376139
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagaga--aaaatgaag 411  Q
    ||||||||  ||||||||||||||  ||| ||||||| |||||||||           ||||||| |||||| |||  |||||||||||  |||| ||||    
T  19376020 agagtagtgttatttgaacaactaaatgagacaacttatgtgacaacttcttttttctctcttttcattggtcaaaaacaatggagagagaaaaaggaag 19376119  T
Q  412 agagagaataagagtataat 431  Q
    ||||||||||||||||||||    
T  19376120 agagagaataagagtataat 19376139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 12349879 - 12349845
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  12349879 gagagaaaaaggaagagagagaataagagtataat 12349845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 14206514 - 14206453
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagaga--aaaatgaagagagagaataagagtataat 431  Q
    ||||||| ||||||||||  |||||||||||  |||||||||||||| |||||||| |||||    
T  14206514 ctcttttcattggttaaaaacaatggagagagaaaaatgaagagagataataagaggataat 14206453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 20719902 - 20719948
Alignment:
Q  118 aagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||| ||||||||||||||||| |||||| ||||||||||| ||||    
T  20719902 aagagtagtgatatttgaacatccatttgagacaacttttgtgacaa 20719948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 21749307 - 21749273
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    ||||||||||||||||||||||||||||| |||||    
T  21749307 gagagaaaaatgaagagagagaataagaggataat 21749273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 24431507 - 24431625
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatgaaga 412  Q
    ||||||| ||||||||||||| |||||| |||||| ||||||||||           ||||||| ||||||||||  || ||  |||||||||| |||||    
T  24431507 gagtagtgatatttgaacaaccatttgagacaactattgtgacaacttcatttttctctcttttcattggttaaacacattggagagagaaaaaggaaga 24431606  T
Q  413 gagagaataagagtataat 431  Q
    ||||||| ||||| |||||    
T  24431607 gagagaacaagaggataat 24431625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 40566190 - 40566224
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||| ||||||    
T  40566190 gagagaaaaatgaagagagagaataagaatataat 40566224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 9714024 - 9714069
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||| ||||||||||||| || |||||||||| ||||||||||    
T  9714024 gagtagtgatatttgaacaaccatatgatacaactcttgtgacaac 9714069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 40566104 - 40566149
Alignment:
Q  119 agaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    |||| ||||||||||||||||| |||||| ||||||||| ||||||    
T  40566104 agagtagtgatatttgaacatccatttgagacaacttttttaacaa 40566149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 424
Target Start/End: Complemental strand, 4434593 - 4434542
Alignment:
Q  375 ttttaattggttaaatgcaatggagaga--aaaatgaagagagagaataaga 424  Q
    |||| ||||||||||  |||||||||||  ||||||||||||||||||||||    
T  4434593 ttttcattggttaaaaacaatggagagagaaaaatgaagagagagaataaga 4434542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 6458892 - 6458832
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagaga-aaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||| |||  ||||||||||| |||| ||| ||||||||||||| ||||||    
T  6458892 ctcttttaattggtcaaaaacaatggagagagaaaaagaaaagagagaataagaatataat 6458832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 19127309 - 19127261
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||||| ||||||||||||| |||| | |||||||||| ||||||    
T  19127309 aaagagtagtgatatttgaacaaccattttaaacaacttttgcgacaac 19127261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 20541280 - 20541240
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||||||||||| ||||||| ||||| |||||||||||    
T  20541280 agtgatatttgaacaactatttgtaacaatttttgtaacaa 20541240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 26791318 - 26791270
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||| | ||||||||||||||| ||||  ||||||||||||||||||    
T  26791318 aaagagaaataatatttgaacaaccattttttacaacttttgtgacaac 26791270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 37821027 - 37821075
Alignment:
Q  313 aagagtagtaatatttgaacaacta-tttgatacaacttttgtgacaac 360  Q
    ||||||||| ||||||||||||||| |||| ||||||||||| ||||||    
T  37821027 aagagtagtgatatttgaacaactattttggtacaacttttgggacaac 37821075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 42532307 - 42532255
Alignment:
Q  307 tttccaaagagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    |||| ||||| |||| |||||||||||||||||| ||| || |||||||||||    
T  42532307 tttcgaaagattagtgatatttgaacaactatttcatataatttttgtgacaa 42532255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 431
Target Start/End: Original strand, 11164264 - 11164383
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatgaag 411  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||           ||||||| ||||||||||  |||||  ||||||||||| |||    
T  11164264 agagtggtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcattggttaaaaacaatggagagagaaaaataaag 11164363  T
Q  412 agagagaataagagtataat 431  Q
    ||||||||||||||||||||    
T  11164364 agagagaataagagtataat 11164383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 431
Target Start/End: Complemental strand, 36133159 - 36133038
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatgg--agagaaaaatga 409  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||           ||||||| |||||||||   ||||||  ||||||||| ||    
T  36133159 aaagagtagtgatatttgaacaactatttcatacaacttttgtgacaacttcttttttctctcttttcattggttaagaacaatggaaagagaaaaagga 36133060  T
Q  410 agagagagaataagagtataat 431  Q
    ||||||||||||||||||||||    
T  36133059 agagagagaataagagtataat 36133038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 431
Target Start/End: Complemental strand, 13711246 - 13711125
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatga 409  Q
    |||||||||| ||||||||||||||||||  ||||||||||||||||||           ||||||| ||||||||||  |||||  |||||||||| ||    
T  13711246 aaagagtagtgatatttgaacaactattttgtacaacttttgtgacaacttcttttttctctcttttcattggttaaaaacaatggagagagaaaaagga 13711147  T
Q  410 agagagagaataagagtataat 431  Q
    ||||| ||||||||||||||||    
T  13711146 agagaaagaataagagtataat 13711125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 3091926 - 3091878
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||    
T  3091926 aaagagtagtgatatttgaacaattatttgatacaacttttgtgacaac 3091878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 431
Target Start/End: Complemental strand, 12600227 - 12600112
Alignment:
Q  318 tagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatgg--agagaaaaatgaagagag 415  Q
    |||| |||||||||||||||||| |||||||||||||||||||           ||||||| |||||||||   ||||||  ||||||||| ||||||||    
T  12600227 tagtgatatttgaacaactatttcatacaacttttgtgacaacttcttttttctctcttttcattggttaagaacaatggaaagagaaaaaggaagagag 12600128  T
Q  416 agaataagagtataat 431  Q
    ||||||| ||||||||    
T  12600127 agaataatagtataat 12600112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 431
Target Start/End: Complemental strand, 39286020 - 39285917
Alignment:
Q  330 aacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatgaagagagagaataagagta 427  Q
    |||||||||||||||||||||||||||||||           || |||| ||||||||||  |||||  ||||||| || ||||||||||||||||||||    
T  39286020 aacaactatttgatacaacttttgtgacaacttcttttttctctttttttattggttaaaaacaatggagagagaataaagaagagagagaataagagta 39285921  T
Q  428 taat 431  Q
    ||||    
T  39285920 taat 39285917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 431
Target Start/End: Complemental strand, 29795618 - 29795500
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagag--aaaaatgaaga 412  Q
    ||||||| ||||||||||| | |||||| |||||||||||||||||           ||||||| |||||| |||  ||||||||||  ||||| |||||    
T  29795618 gagtagtgatatttgaacatcaatttgaaacaacttttgtgacaaccacttttttctctcttttcattggtcaaaaacaatggagagataaaaaggaaga 29795519  T
Q  413 gagagaataagagtataat 431  Q
    || ||||||||||||||||    
T  29795518 gaaagaataagagtataat 29795500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 431
Target Start/End: Complemental strand, 22390337 - 22390216
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagaga--aaaatga 409  Q
    |||||||||  ||||||||||| | |||||| |||||| ||||||||||           ||||||| |||||| |||  |||||||||||  |||| ||    
T  22390337 aaagagtagagatatttgaacatccatttgagacaactcttgtgacaacttcttttctctctcttttcattggtcaaaaacaatggagagagaaaaaaga 22390238  T
Q  410 agagagagaataagagtataat 431  Q
    ||||||||||||||||||||||    
T  22390237 agagagagaataagagtataat 22390216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 29795614 - 29795574
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  29795614 agtgatatttgaacatcaatttgaaacaacttttgtgacaa 29795574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 14140285 - 14140344
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagagaaaaatgaagagagagaataagagtataat 431  Q
    ||||||| |||||| |||  ||||||||||||||| | ||||| ||||||||||||||||    
T  14140285 ctcttttcattggtcaaaaacaatggagagaaaaaggtagagatagaataagagtataat 14140344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 27529651 - 27529600
Alignment:
Q  373 tcttttaattggttaaatgcaatggagagaaaaatgaagagagagaataaga 424  Q
    |||||| |||||| |||  ||||||||||||||| |||||||||||||||||    
T  27529651 tcttttcattggtcaaaaacaatggagagaaaaaggaagagagagaataaga 27529600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 39454135 - 39454174
Alignment:
Q  119 agaggagtgatatttgaacatctatttgaaacaacttttg 158  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  39454135 agagtagtgatatttgaacatctatttgaaacaagttttg 39454174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 44190018 - 44189963
Alignment:
Q  109 atttttcaaaagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    |||||||||||||| ||||||||||||||||| ||| || |||||| |||| ||||    
T  44190018 atttttcaaaagagtagtgatatttgaacatccattcgagacaactcttgtgacaa 44189963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 1889245 - 1889211
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  1889245 gagagaaaaaggaagagagagaataagagtataat 1889211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 5455342 - 5455380
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttg 353  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  5455342 gagtagtaatatttgaacaaccattttatacaacttttg 5455380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 422
Target Start/End: Complemental strand, 12962569 - 12962459
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatgaag 411  Q
    |||||||| |||||||||||||||||||||| || |||||| ||||            ||||||||||||||||||  |||||  ||||||||||  |||    
T  12962569 agagtagtgatatttgaacaactatttgatataaattttgtaacaatttcttttctctctcttttaattggttaaaaacaatggagagagaaaaagaaag 12962470  T
Q  412 agagagaataa 422  Q
    |||||||||||    
T  12962469 agagagaataa 12962459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 14714084 - 14714050
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||| ||||||    
T  14714084 gagagaaaaatgaagagagagaataagattataat 14714050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 36435857 - 36435819
Alignment:
Q  126 tgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  36435857 tgatatttgaacatttatttgaaacaacttttgtgacaa 36435819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 421
Target Start/End: Original strand, 39454135 - 39454242
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagagaaaaatgaagag 413  Q
    |||||||| ||||||||||| |||||||| |||| ||||| |||||            ||||||| |||||| |||  ||||||||||||||| ||||||    
T  39454135 agagtagtgatatttgaacatctatttgaaacaagttttgagacaatctcttttttctctcttttcattggtcaaaaacaatggagagaaaaaggaagag 39454234  T
Q  414 agagaata 421  Q
    ||||||||    
T  39454235 agagaata 39454242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 2464311 - 2464274
Alignment:
Q  323 atatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  2464311 atatttgaacatccatttgatacaacttttgtgacaac 2464274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 6365364 - 6365331
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaactttt 157  Q
    |||||||||||||||||||||| |||||||||||    
T  6365364 agtgatatttgaacatctatttaaaacaactttt 6365331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 431
Target Start/End: Complemental strand, 32750191 - 32750062
Alignment:
Q  304 atttttccaaagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagag 401  Q
    ||||||| ||||||||||  |||||||||||| || ||| |||| ||||||||||||           ||||||| |||||| |||  |||||  |||||    
T  32750191 atttttcgaaagagtagtgttatttgaacaaccatatgagacaatttttgtgacaacttattttttctctcttttcattggtcaaaaacaatggagagag 32750092  T
Q  402 aaaaatgaagagagagaataagagtataat 431  Q
    ||||| |||||| ||||||||||| |||||    
T  32750091 aaaaaggaagagggagaataagaggataat 32750062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 34442291 - 34442258
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaactttt 157  Q
    ||||||||||||||||||||||||||||| ||||    
T  34442291 agtgatatttgaacatctatttgaaacaattttt 34442258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 424
Target Start/End: Original strand, 39737637 - 39737686
Alignment:
Q  375 ttttaattggttaaatgcaatggagagaaaaatgaagagagagaataaga 424  Q
    |||||||||||||||  |||| |||||||||||| ||||||| |||||||    
T  39737637 ttttaattggttaaaatcaatagagagaaaaatgtagagagataataaga 39737686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 44190019 - 44189962
Alignment:
Q  303 catttttccaaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||| |||||||||| ||||||||||| | ||| || |||||| ||||||||||    
T  44190019 catttttcaaaagagtagtgatatttgaacatccattcgagacaactcttgtgacaac 44189962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 315 - 431
Target Start/End: Complemental strand, 29706085 - 29705967
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatgg--agagaaaaatgaaga 412  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||           ||||||| |||||| |||  ||||||  |||||||||||||||    
T  29706085 gagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcattggtaaaaaacaatggatagagaaaaatgaaga 29705986  T
Q  413 gagagaataagagtataat 431  Q
    ||||||||||||| |||||    
T  29705985 gagagaataagagaataat 29705967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 11173635 - 11173587
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  11173635 aaagagtaataatatttgaacaaccatttgatacaacttttgtgacaac 11173587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 431
Target Start/End: Complemental strand, 47849853 - 47849736
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagagaaaaatgaagag 413  Q
    |||||||| ||||||||||| |||||||| |||||| |||||||| |           ||||||| |||||| |||  |||||||||||||||  |||||    
T  47849853 agagtagtgatatttgaacatctatttgaaacaactcttgtgacagcctcttttttctctcttttcattggtcaaaaacaatggagagaaaaagaaagag 47849754  T
Q  414 agagaataagagtataat 431  Q
    ||||||||||||||||||    
T  47849753 agagaataagagtataat 47849736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 424
Target Start/End: Original strand, 32687846 - 32687960
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaactttt-gtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatga 409  Q
    ||||||| | |||||||||||||||||||||||||||||| |||| |||           ||||||| ||||||||||  |||||  |||||||||||||    
T  32687846 aagagtaatgatatttgaacaactatttgatacaacttttggtgataacttcttttttctctcttttcattggttaaaaacaatggagagagaaaaatga 32687945  T
Q  410 agagagagaataaga 424  Q
    |||||||||||||||    
T  32687946 agagagagaataaga 32687960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 46953132 - 46953086
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||    
T  46953132 agagtagtgatatttgaacaactatttgatacaacttttatgacaac 46953086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 359
Target Start/End: Original strand, 7231894 - 7231939
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||    
T  7231894 agagtagtgatatttgaacaaccatttgatacaacttttgtgacaa 7231939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 431
Target Start/End: Original strand, 31249218 - 31249329
Alignment:
Q  323 atatttgaacaactatttgatacaacttttg-tgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggaga--gaaaaatgaagagagagaa 419  Q
    ||||||||||||| |||| |||||||||||| |||||||           ||||||| ||||||||||  |||||||||  |||||||||||||||||||    
T  31249218 atatttgaacaaccatttcatacaacttttggtgacaactttttttttttctcttttcattggttaaaaacaatggagaaagaaaaatgaagagagagaa 31249317  T
Q  420 taagagtataat 431  Q
    |||||| |||||    
T  31249318 taagaggataat 31249329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 34733187 - 34733221
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaacttttg 158  Q
    |||||||||||||||||||||||||||||||||||    
T  34733187 agtgatatttgaacatctatttgaaacaacttttg 34733221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 49196794 - 49196760
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||||||||||    
T  49196794 gagagaaaaatgaagagagagaataagagtataat 49196760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 108615 - 108574
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttg 353  Q
    |||||||||| |||||||||||||||||| ||||||||||||    
T  108615 aaagagtagtgatatttgaacaactatttcatacaacttttg 108574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 32457642 - 32457762
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgt--gacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagaga--aaaatgaa 410  Q
    ||||||| ||||||||||||||||||||||||| |||| |  ||||||           ||||||| ||||||||||   ||||||||||  |||| |||    
T  32457642 gagtagtgatatttgaacaactatttgatacaatttttttttgacaacttcttttttctctcttttcattggttaaaaataatggagagagaaaaaggaa 32457741  T
Q  411 gagagagaataagagtataat 431  Q
    |||||||||||||||||||||    
T  32457742 gagagagaataagagtataat 32457762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 424
Target Start/End: Complemental strand, 46473312 - 46473199
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatgaa 410  Q
    ||||||| | ||||||||||||| |||||||||||||||| |||||||           ||||||| |||||| |||  |||||  |||||||||| |||    
T  46473312 aagagtaatgatatttgaacaaccatttgatacaacttttatgacaacttcttttttctctcttttcattggtcaaaaacaatggagagagaaaaaggaa 46473213  T
Q  411 gagagagaataaga 424  Q
    ||||||||||||||    
T  46473212 gagagagaataaga 46473199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 431
Target Start/End: Complemental strand, 6126638 - 6126518
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttg-tgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagaga--aaaatgaa 410  Q
    |||||||| ||||||||||||| |||| |||||||||||| | |||||           ||||||| ||||||||||  |||||||||||  |||| |||    
T  6126638 agagtagtgatatttgaacaaccatttcatacaacttttggttacaacttcttttttctctcttttcattggttaaaaacaatggagagagaaaaaggaa 6126539  T
Q  411 gagagagaataagagtataat 431  Q
    ||||||||||||||| |||||    
T  6126538 gagagagaataagaggataat 6126518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 22813196 - 22813136
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagagaaaaa-tgaagagagagaataagagtataat 431  Q
    ||||||| |||||| |||  ||||||||||||||| ||||||||||||||| |||||||||    
T  22813196 ctcttttcattggtcaaaaacaatggagagaaaaaatgaagagagagaatatgagtataat 22813136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 47849853 - 47849813
Alignment:
Q  119 agaggagtgatatttgaacatctatttgaaacaacttttgt 159  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  47849853 agagtagtgatatttgaacatctatttgaaacaactcttgt 47849813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 52727333 - 52727381
Alignment:
Q  116 aaaagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||| |||||||||| |||||||||||||||||| |||||| ||||    
T  52727333 aaaagagtagtgatatttaaacatctatttgaaacaatttttgtgacaa 52727381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 20380776 - 20380823
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||||| ||||||||||||| |||| | |||||||||||||||||    
T  20380776 aagagtagtgatatttgaacaaccattttaaacaacttttgtgacaac 20380823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 359
Target Start/End: Complemental strand, 49196881 - 49196834
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    ||||||| || |||||||||||| ||||||||| ||||||||||||||    
T  49196881 aaagagttgtgatatttgaacaattatttgataaaacttttgtgacaa 49196834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 14957934 - 14957900
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  14957934 gagagaaaaaggaagagagagaataagagtataat 14957900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 28300384 - 28300350
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||| ||||||    
T  28300384 gagagaaaaatgaagagagagaataagaatataat 28300350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 32536839 - 32536805
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||| ||||||||||||||||    
T  32536839 gagagaaaaatgaagagaaagaataagagtataat 32536805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 37303567 - 37303521
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    |||||||||  ||||||||||||||| ||| ||||||||||||||||    
T  37303567 aagagtagtgttatttgaacaactatatgagacaacttttgtgacaa 37303521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 46953044 - 46953010
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  46953044 gagagaaaaaggaagagagagaataagagtataat 46953010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 49130952 - 49130918
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  49130952 gagagaaaaaggaagagagagaataagagtataat 49130918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 28300535 - 28300580
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||| ||||||||||||| || |||||||||| ||||||||||    
T  28300535 gagtagtgatatttgaacaaccatatgatacaactcttgtgacaac 28300580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 31997988 - 31997947
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttg 353  Q
    |||||||||| ||||||||||||| |||||| ||||||||||    
T  31997988 aaagagtagtgatatttgaacaaccatttgagacaacttttg 31997947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 41111960 - 41112005
Alignment:
Q  119 agaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    |||| ||||||||||||||||| |||||| ||||||||| ||||||    
T  41111960 agagtagtgatatttgaacatccatttgagacaacttttttaacaa 41112005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 431
Target Start/End: Complemental strand, 41309124 - 41309064
Alignment:
Q  373 tcttttaattggttaaatgcaatggagaga--aaaatgaagagagagaataagagtataat 431  Q
    |||||| ||||||||||  |||||||||||  |||| |||||||||||||||||| |||||    
T  41309124 tcttttcattggttaaaaacaatggagagagaaaaaagaagagagagaataagaggataat 41309064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 55344181 - 55344230
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaac-ttttgtgacaac 360  Q
    |||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  55344181 aaagagtagtgatatttgaacaactatttcatacaacattttatgacaac 55344230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 29706081 - 29706041
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||||||||||| |||||||| ||||||||||| ||||    
T  29706081 agtgatatttgaacaactatttgatacaacttttgtgacaa 29706041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 34733183 - 34733227
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    ||||||| ||||||||||| |||||||| |||||||||| |||||    
T  34733183 gagtagtgatatttgaacatctatttgaaacaacttttgagacaa 34733227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 41957636 - 41957588
Alignment:
Q  374 cttttaattggttaaatgcaatggagagaaaaatgaagagagagaataa 422  Q
    ||||| |||||| |||  ||||||||||||||| |||||||||||||||    
T  41957636 cttttcattggtcaaaaacaatggagagaaaaaggaagagagagaataa 41957588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 433
Target Start/End: Complemental strand, 42102335 - 42102299
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataatct 433  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  42102335 gagagaaaaaggaagagagagaataagaatataatct 42102299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 48179001 - 48179053
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagagaaaaatgaagagagagaataaga 424  Q
    ||||||| ||||||||||   ||| |||||||||||||||||||| |||||||    
T  48179001 ctctttttattggttaaaaataatagagagaaaaatgaagagagaaaataaga 48179053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 51464153 - 51464193
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttg 353  Q
    ||||||||| ||||||||||||| |||| ||||||||||||    
T  51464153 aagagtagtgatatttgaacaaccattttatacaacttttg 51464193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 49453662 - 49453614
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49453662 aaagagtagtgatatttgaacaactatttgatacaacttttgtgacaac 49453614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 27687468 - 27687526
Alignment:
Q  373 tcttttaattggttaaatgcaatggagagaaaaatgaagagagagaataagagtataat 431  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||||    
T  27687468 tcttttaattggttaaaagcaatagagagaaaaatgaagagagagaataaaaatataat 27687526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 31703426 - 31703485
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagagaaaaatgaagagagagaataagagtataat 431  Q
    ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||| |||||    
T  31703426 ctcttttcattggttaaaaacaatggagacaaaaatgaagagagagaataagaggataat 31703485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 431
Target Start/End: Complemental strand, 40610411 - 40610293
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagaga--aaaatgaaga 412  Q
    ||||||| ||||||||||| | |||||| |||||||||||||||||           ||||||| |||||| |||  |||||||||||  |||| |||||    
T  40610411 gagtagtgatatttgaacatccatttgagacaacttttgtgacaacttcttttctctctcttttcattggtcaaaaacaatggagagagaaaaaggaaga 40610312  T
Q  413 gagagaataagagtataat 431  Q
    |||||||||||||||||||    
T  40610311 gagagaataagagtataat 40610293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 2362551 - 2362506
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  2362551 gagtagtgatatttgaacaactatttgatacaatttttgtgacaac 2362506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 431
Target Start/End: Original strand, 37843321 - 37843439
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggag--agaaaaatga 409  Q
    |||||||||| |||||||||||||||||||||| || || ||||||||            ||||||| ||||||||||  ||||||||  ||||||||||    
T  37843321 aaagagtagtgatatttgaacaactatttgatataatttgtgtgacaa---tttttttctctcttttcattggttaaaaacaatggagtgagaaaaatga 37843417  T
Q  410 agagagagaataagagtataat 431  Q
    ||||||| ||||||||||||||    
T  37843418 agagagataataagagtataat 37843439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 360
Target Start/End: Complemental strand, 36418251 - 36418216
Alignment:
Q  325 atttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||||||||||||||||||||||||||||||||    
T  36418251 atttgaacaactatttgatacaacttttgtgacaac 36418216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 431
Target Start/End: Complemental strand, 46948162 - 46948043
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagaga--aaaatgaag 411  Q
    |||||||| ||||||||||| | |||||| |||||| ||||||||||            |||||| |||||| |||  |||||||||||  |||||||||    
T  46948162 agagtagtgatatttgaacatccatttgagacaactcttgtgacaacttcttttctctatcttttcattggtcaaaaacaatggagagagaaaaatgaag 46948063  T
Q  412 agagagaataagagtataat 431  Q
    ||||||||||||||||||||    
T  46948062 agagagaataagagtataat 46948043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 19651533 - 19651481
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagagaaaaatgaagagagagaataaga 424  Q
    ||||||| |||||| |||  ||||||||||||||| |||||||||||||||||    
T  19651533 ctctttttattggtcaaaaacaatggagagaaaaaggaagagagagaataaga 19651481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 28716327 - 28716284
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttgtga 356  Q
    ||||||||| ||||||||||||| |||||| |||||||||||||    
T  28716327 aagagtagtgatatttgaacaaccatttgagacaacttttgtga 28716284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 36930702 - 36930761
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagagaaaaatgaagagagagaataagagtataat 431  Q
    ||||||| |||||| |||  ||||||||||||||| ||||||||||| ||||| ||||||    
T  36930702 ctctttttattggtcaaaaacaatggagagaaaaaggaagagagagagtaagaatataat 36930761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 431
Target Start/End: Complemental strand, 37690576 - 37690482
Alignment:
Q  336 tatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagaga--aaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||           ||||||| |||||||||   |||||||||||  ||||||||||||||||||||||| |||||    
T  37690576 tatttgatacaacttttgtgacaacttcttttctctctcttttcattggttaa---caatggagagagaaaaatgaagagagagaataagagaataat 37690482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 49453662 - 49453615
Alignment:
Q  117 aaagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    |||||| ||||||||||||||| |||||||| ||||||||||| ||||    
T  49453662 aaagagtagtgatatttgaacaactatttgatacaacttttgtgacaa 49453615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 8391311 - 8391345
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    ||||||||||||||||||||||||||||| |||||    
T  8391311 gagagaaaaatgaagagagagaataagaggataat 8391345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 10384626 - 10384592
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  10384626 gagagaaaaaagaagagagagaataagagtataat 10384592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 17526518 - 17526484
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||| ||||||    
T  17526518 gagagaaaaatgaagagagagaataagaatataat 17526484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 43755651 - 43755685
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  43755651 gagagaaaaaagaagagagagaataagagtataat 43755685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 45042386 - 45042325
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagagaaaaat--gaagagagagaataagagtataat 431  Q
    ||||||| |||||| |||  |||||||||||||||   ||||||||||||||||||||||||    
T  45042386 ctcttttcattggtcaaaaacaatggagagaaaaaaaggaagagagagaataagagtataat 45042325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 48872924 - 48872958
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    ||||||||||||||||||||||||||||| |||||    
T  48872924 gagagaaaaatgaagagagagaataagaggataat 48872958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 51571609 - 51571563
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||| || ||||||||||||| |||| |||||||||||||||||||    
T  51571609 agagttgtgatatttgaacaaccatttaatacaacttttgtgacaac 51571563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 11460968 - 11460931
Alignment:
Q  323 atatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  11460968 atatttgaacaacaatttgatacaacttttttgacaac 11460931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 27687419 - 27687452
Alignment:
Q  323 atatttgaacaactatttgatacaacttttgtga 356  Q
    |||||||||||||| |||||||||||||||||||    
T  27687419 atatttgaacaactgtttgatacaacttttgtga 27687452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 33676075 - 33676038
Alignment:
Q  323 atatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  33676075 atatttgaacaactatttaataaaacttttgtgacaac 33676038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 48872837 - 48872878
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttg 353  Q
    |||||||||| ||||||||||||| |||| ||||||||||||    
T  48872837 aaagagtagtgatatttgaacaaccatttcatacaacttttg 48872878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 14002627 - 14002675
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgat-acaacttttgtgacaa 359  Q
    |||||||||| ||||||||||||||||||| | ||||||||| ||||||    
T  14002627 aaagagtagtgatatttgaacaactatttgctaacaacttttatgacaa 14002675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 22389412 - 22389459
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||| | ||||||||||||| ||||||| ||||||||||||||||    
T  22389412 aaagagtaatgatatttgaacaaccatttgat-caacttttgtgacaac 22389459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 25988935 - 25988991
Alignment:
Q  375 ttttaattggttaaatgcaatggagagaaaaatgaagagagagaataagagtataat 431  Q
    |||| |||||| |||  ||||||||||||||| ||||||||||| ||||| ||||||    
T  25988935 tttttattggtcaaaaacaatggagagaaaaaggaagagagagagtaagaatataat 25988991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 433
Target Start/End: Complemental strand, 36794713 - 36794677
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataatct 433  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  36794713 gagagaaaaatgaagaaagagaataagaatataatct 36794677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 40610407 - 40610367
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||||||||||||| |||||| ||||||||||| ||||    
T  40610407 agtgatatttgaacatccatttgagacaacttttgtgacaa 40610367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 431
Target Start/End: Complemental strand, 1897888 - 1897750
Alignment:
Q  294 atcatttctcatttttccaaagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgca 393  Q
    |||||||| ||||||  ||||||||||| ||||||||||| |||||||| |||||||||||||||||           ||||||| |||||| |||  ||    
T  1897888 atcatttc-cattttctcaaagagtagtgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattggtcaaaaaca 1897790  T
Q  394 atg--gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||  ||||||||||  |||||||||||||||||||||||    
T  1897789 atgaagagagaaaaagtaagagagagaataagagtataat 1897750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 431
Target Start/End: Complemental strand, 32253966 - 32253844
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaa-cnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatg 408  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||             ||||||| ||||||||||  |||||  ||||||||||||    
T  32253966 aaagagtagtgatatttgaacaactatttggtacaacttttgtgacaatttttttttctctctcttttcattggttaaaaacaatggagagagaaaaatg 32253867  T
Q  409 aagagagagaataagagtataat 431  Q
    ||||||| |||||||||||||||    
T  32253866 aagagagggaataagagtataat 32253844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 32853033 - 32853151
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaat--ggagagaaaaatgaaga 412  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||           || |||| ||||||||||  ||||   |||||||||| |||||    
T  32853033 gagtagtgatatttgaacaactatttgatacaatttttgtgacaacttcttttttctcttttttcattggttaaaaacaattgagagagaaaaaagaaga 32853132  T
Q  413 gagagaataagagtataat 431  Q
    |||||||||||||||||||    
T  32853133 gagagaataagagtataat 32853151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 1897871 - 1897824
Alignment:
Q  117 aaagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  1897871 aaagagtagtgatatttgaacatctatttgaaacaacttttgtgacaa 1897824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 31480782 - 31480841
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagagaaaaatgaagagagagaataagagtataat 431  Q
    ||||||| ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||    
T  31480782 ctctttttattggttaaaatcaatggagagaaaaaggaagagaaagaataagagtataat 31480841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 2582839 - 2582800
Alignment:
Q  125 gtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  2582839 gtgatatttgaacatctatttgaaacaacttttgtgacaa 2582800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 10628466 - 10628425
Alignment:
Q  116 aaaagaggagtgatatttgaacatctatttgaaacaactttt 157  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  10628466 aaaagaggagtgatatttgaacaactatttgatacaactttt 10628425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 2241712 - 2241756
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtga 356  Q
    ||||| |||| ||||||||||||| ||||||||||||||||||||    
T  2241712 aaagaatagtgatatttgaacaaccatttgatacaacttttgtga 2241756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 2582847 - 2582799
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||| || ||||||||||| |||||||| |||||||||||||||||    
T  2582847 aaagagtggtgatatttgaacatctatttgaaacaacttttgtgacaac 2582799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 10628465 - 10628425
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaactttt 352  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  10628465 aaagaggagtgatatttgaacaactatttgatacaactttt 10628425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 431
Target Start/End: Original strand, 31517067 - 31517187
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagaga--aaaatgaa 410  Q
    |||||||||  ||||||||||||||  ||| ||||||| |||||||||           ||||||| |||||||||   |||||||||||  |||| |||    
T  31517067 aagagtagtgttatttgaacaactaaatgagacaacttatgtgacaacttcttttttctctctttttattggttaagatcaatggagagagaaaaaggaa 31517166  T
Q  411 gagagagaataagagtataat 431  Q
    |||||||||||||||||||||    
T  31517167 gagagagaataagagtataat 31517187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 34021057 - 34021105
Alignment:
Q  116 aaaagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||| ||||||||||||||||| |||||| ||||||||| ||||||    
T  34021057 aaaagagtagtgatatttgaacatccatttgagacaacttttttaacaa 34021105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 352
Target Start/End: Original strand, 1434564 - 1434602
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaactttt 352  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  1434564 agagtagtgatatttgaacaactatttgatacaattttt 1434602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 28883719 - 28883753
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||| ||||||||    
T  28883719 gagagaaaaatgaagagagagaataaaagtataat 28883753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 32457225 - 32457259
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  32457225 gagagaaaaaggaagagagagaataagagtataat 32457259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 3179949 - 3180001
Alignment:
Q  372 ctcttttaattggttaaatgcaatg--gagagaaaaatgaagagagagaataa 422  Q
    ||||||| |||||||||| ||||||  |||||||||| |||||||||||||||    
T  3179949 ctctttttattggttaaaagcaatggagagagaaaaaggaagagagagaataa 3180001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 30906549 - 30906586
Alignment:
Q  117 aaagaggagtgatatttgaacatctatttgaaacaact 154  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  30906549 aaagagtagtgatatttgaacatccatttgaaacaact 30906586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 30733191 - 30733147
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    ||||||| |||||| |||||| |||||| ||||||||||||||||    
T  30733191 gagtagtgatatttaaacaaccatttgagacaacttttgtgacaa 30733147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 12142077 - 12142021
Alignment:
Q  304 atttttccaaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  12142077 atttttacaatgagtagtgatatttgaacaaccatttgatacaacttttgtgacaac 12142021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 48866815 - 48866863
Alignment:
Q  116 aaaagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  48866815 aaaagagtagtgatatttgaacatctatttgaaacaacttttgtgacaa 48866863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 359
Target Start/End: Complemental strand, 6353912 - 6353867
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||    
T  6353912 agagtagtgatatttgaaaaactatttgatacaacttttgtgacaa 6353867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 431
Target Start/End: Original strand, 48866816 - 48866937
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatga 409  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||||||           ||||||| ||| || |||  |||||  |||||||||| ||    
T  48866816 aaagagtagtgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctcttttcattagtcaaaaacaatggagagagaaaaagga 48866915  T
Q  410 agagagagaataagagtataat 431  Q
    |||||||||||| |||||||||    
T  48866916 agagagagaataggagtataat 48866937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 8792486 - 8792534
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||||||    
T  8792486 aaagagtaatgatatttgaacaaccatttgatacaacttttgtgacaac 8792534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 43213406 - 43213372
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||||||||||    
T  43213406 gagagaaaaatgaagagagagaataagagtataat 43213372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 10591334 - 10591289
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||| ||||||||||||| |||||| |||||||||||||||||    
T  10591334 gagtagtgatatttgaacaaccatttgagacaacttttgtgacaac 10591289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 431
Target Start/End: Complemental strand, 46651857 - 46651736
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatga 409  Q
    |||||||||| ||||||||||||| || |||||||| | ||||||||||           ||||||| |||||| |||  |||||  |||||||||||||    
T  46651857 aaagagtagtgatatttgaacaaccatatgatacaattcttgtgacaacttctattttctctcttttcattggtcaaaaacaatggagagagaaaaatga 46651758  T
Q  410 agagagagaataagagtataat 431  Q
     |||||||||||| ||||||||    
T  46651757 tgagagagaataaaagtataat 46651736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 32428242 - 32428206
Alignment:
Q  323 atatttgaacaactatttgatacaacttttgtgacaa 359  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32428242 atatttgaacaactatttgatacaacttttatgacaa 32428206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 32933721 - 32933685
Alignment:
Q  323 atatttgaacaactatttgatacaacttttgtgacaa 359  Q
    |||||||||||| ||||||||||||||||||||||||    
T  32933721 atatttgaacaattatttgatacaacttttgtgacaa 32933685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 431
Target Start/End: Original strand, 37351877 - 37351997
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatgaa 410  Q
    ||||||||| ||||||||||||  |||||||| ||||||||||||||            ||||||| |||||| |||  |||||  |||||||||| |||    
T  37351877 aagagtagtgatatttgaacaatcatttgatataacttttgtgacaatttcttttttctctctttttattggtcaaaaacaatggagagagaaaaaagaa 37351976  T
Q  411 gagagagaataagagtataat 431  Q
    ||||||||||||||| |||||    
T  37351977 gagagagaataagagaataat 37351997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 21839023 - 21839066
Alignment:
Q  316 agtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    |||||| ||||||||||||||||||||||||| |||||| ||||    
T  21839023 agtagtgatatttgaacaactatttgatacaatttttgtaacaa 21839066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 431
Target Start/End: Complemental strand, 30180690 - 30180571
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagaga--aaaatgaag 411  Q
    |||||||| ||||||||||| |||||||| |||| ||||| ||||||           ||||||| || ||| |||  |||||||||||  |||| ||||    
T  30180690 agagtagtgatatttgaacatctatttgaaacaatttttgcgacaacctcttttttctctcttttcatgggtcaaaaacaatggagagagaaaaaggaag 30180591  T
Q  412 agagagaataagagtataat 431  Q
    ||||||||||||||||||||    
T  30180590 agagagaataagagtataat 30180571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 30180690 - 30180651
Alignment:
Q  119 agaggagtgatatttgaacatctatttgaaacaacttttg 158  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  30180690 agagtagtgatatttgaacatctatttgaaacaatttttg 30180651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 37856074 - 37856109
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaacttttgt 159  Q
    |||||||||| |||||||||||||||||||||||||    
T  37856074 agtgatatttaaacatctatttgaaacaacttttgt 37856109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 43025932 - 43025873
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagagaaaaatgaagagagagaataagagtataat 431  Q
    ||||||| | ||||||||  ||| ||||||||||| ||||||||||||||| ||||||||    
T  43025932 ctcttttcaatggttaaaaacaacggagagaaaaaggaagagagagaataaaagtataat 43025873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 359
Target Start/End: Complemental strand, 43445592 - 43445545
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    |||||||||| ||||||||||||  ||||||||||| |||||||||||    
T  43445592 aaagagtagtgatatttgaacaatcatttgatacaatttttgtgacaa 43445545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 431
Target Start/End: Complemental strand, 5978761 - 5978643
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatg--gagagaaaaatgaaga 412  Q
    ||||||| ||||||||||||| || |||||||||| ||||||||||           ||||||| |||||| |||  |||||  |||||||||| |||||    
T  5978761 gagtagtgatatttgaacaaccatatgatacaactcttgtgacaacttctattttctctcttttcattggtcaaaaacaatggagagagaaaaaggaaga 5978662  T
Q  413 gagagaataagagtataat 431  Q
    |||||||||  ||||||||    
T  5978661 gagagaatacaagtataat 5978643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 11778677 - 11778643
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||| ||||||||    
T  11778677 gagagaaaaatgaagagagagaataaaagtataat 11778643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 422
Target Start/End: Complemental strand, 17157258 - 17157208
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagagaaaaatgaagagagagaataa 422  Q
    ||||||| |||||| |||  |||||||||||||||||||||||||| ||||    
T  17157258 ctcttttgattggtcaaaaacaatggagagaaaaatgaagagagaggataa 17157208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 17500795 - 17500761
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||| ||||||    
T  17500795 gagagaaaaatgaagagagagaataagaatataat 17500761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 17552419 - 17552453
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||| ||||||    
T  17552419 gagagaaaaatgaagagagagaataagaatataat 17552453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 30862734 - 30862700
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  30862734 gagagaaaaaggaagagagagaataagagtataat 30862700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 33684863 - 33684817
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||||  ||||||||||||||| ||| |||||||||||||||||    
T  33684863 agagtagtgttatttgaacaactatatgaaacaacttttgtgacaac 33684817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 34348914 - 34348960
Alignment:
Q  118 aagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||| |||||||||||||||||||||| | ||||||||| ||||||    
T  34348914 aagagtagtgatatttgaacatctatttcatacaacttttttaacaa 34348960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 41254901 - 41254840
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagag--aaaaatgaagagagagaataagagtataat 431  Q
    ||||||| ||||||||||  |||| |||||  ||||| ||||||||||||||||||||||||    
T  41254901 ctcttttcattggttaaaaacaatagagagggaaaaaggaagagagagaataagagtataat 41254840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 360
Target Start/End: Original strand, 7077650 - 7077687
Alignment:
Q  323 atatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||||||||||||| | |||||||||||||||||    
T  7077650 atatttgaacaactattttaaacaacttttgtgacaac 7077687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 7807240 - 7807199
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttg 353  Q
    |||||||||| ||||||||||||| |||| ||||||||||||    
T  7807240 aaagagtagtgatatttgaacaaccatttcatacaacttttg 7807199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 47945169 - 47945120
Alignment:
Q  312 aaagagtagtaatatttgaacaact-atttgatacaacttttgtgacaac 360  Q
    |||||||||| ||||||||||||||  |||||||||||||||| ||||||    
T  47945169 aaagagtagtgatatttgaacaactcttttgatacaacttttgggacaac 47945120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 47950599 - 47950550
Alignment:
Q  312 aaagagtagtaatatttgaacaact-atttgatacaacttttgtgacaac 360  Q
    |||||||||| ||||||||||||||  |||||||||||||||| ||||||    
T  47950599 aaagagtagtgatatttgaacaactcttttgatacaacttttgggacaac 47950550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 2790273 - 2790241
Alignment:
Q  399 gagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||| ||||||||||||||||||||||||    
T  2790273 gagaaaaaggaagagagagaataagagtataat 2790241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 21839026 - 21839066
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||||||||||| |||||||| |||| |||||||||||    
T  21839026 agtgatatttgaacaactatttgatacaatttttgtaacaa 21839066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 43260175 - 43260135
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttg 353  Q
    ||||||||| ||||||||||||| |||| ||||||||||||    
T  43260175 aagagtagtcatatttgaacaaccatttcatacaacttttg 43260135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 44894420 - 44894480
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagaga-aaaatgaagagagagaataagagtataat 431  Q
    ||||||| |||||| |||  ||||||||||| |||| |||||||||||||| |||||||||    
T  44894420 ctcttttcattggtaaaaaacaatggagagagaaaaagaagagagagaatatgagtataat 44894480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 15076 - 15123
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  15076 aagagtagtgatatttgaacaactatttggtacaacttttgtgacaac 15123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 431
Target Start/End: Complemental strand, 7678906 - 7678796
Alignment:
Q  323 atatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagag--aaaaatgaagagagagaat 420  Q
    |||||||||||||||||||||||||||||||| |||||           ||||||| ||||||||||  ||||||||||  ||||| |||||||||||||    
T  7678906 atatttgaacaactatttgatacaacttttgtaacaacttcttttttctctcttttcattggttaaaaacaatggagagaaaaaaaggaagagagagaat 7678807  T
Q  421 aagagtataat 431  Q
    || | ||||||    
T  7678806 aaaaatataat 7678796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 21273598 - 21273644
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||    
T  21273598 agagtagtgatatttgaacaactatttcatacaacttttgtgacaac 21273644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 431
Target Start/End: Original strand, 42543367 - 42543486
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttg-tgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagagaaaaatgaag 411  Q
    ||||||||| ||| ||||||||| |||| |||||||||||| |||||||           ||||||| ||||| ||||  ||||||||||||||| ||||    
T  42543367 aagagtagtgataattgaacaaccatttcatacaacttttggtgacaacttcttttttctctcttttcattggctaaaaacaatggagagaaaaaggaag 42543466  T
Q  412 agagagaataagagtataat 431  Q
    |||||||||||||| |||||    
T  42543467 agagagaataagaggataat 42543486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 5359516 - 5359476
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  5359516 agtgatatttgaacatctatttgaaacaacttttgtgacaa 5359476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 26294362 - 26294314
Alignment:
Q  116 aaaagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  26294362 aaaagagtagtgatatttgaacatatatttgaaacaacttttgtgacaa 26294314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 26307619 - 26307571
Alignment:
Q  116 aaaagaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  26307619 aaaagagtagtgatatttgaacatatatttgaaacaacttttgtgacaa 26307571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 9046960 - 9047003
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgaca 358  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||    
T  9046960 gagtagtgatatttgaacaactatttgatacaatttttgtgaca 9047003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 26871169 - 26871110
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagagaaaaatgaagagagagaataagagtataat 431  Q
    ||||||| |||||| |||  ||||||||||||||| ||||||||| ||||||||||||||    
T  26871169 ctcttttcattggtcaaaaacaatggagagaaaaaagaagagagataataagagtataat 26871110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 43403968 - 43403921
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||||||    
T  43403968 aagagtagtgatatttgaacaactatttgagacaactttcgtgacaac 43403921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 1179559 - 1179513
Alignment:
Q  314 agagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||| |||||| ||||||||||||||| |||||||||||||||    
T  1179559 agagtagtgatatttaaacaactatttgatataacttttgtgacaac 1179513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 424
Target Start/End: Complemental strand, 13924204 - 13924082
Alignment:
Q  303 catttttccaaagagtagtaatatttgaacaact-atttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatggagag 401  Q
    |||||||| || ||||| ||||||||||||||||  |||| |||||||||||||||||            ||||| | ||||||||||  |||| |||||    
T  13924204 catttttctaatgagtaataatatttgaacaactcttttggtacaacttttgtgacaatcttgttgtcctctcttctcattggttaaaaccaatagagag 13924105  T
Q  402 aaaaatgaagagagagaataaga 424  Q
    ||||| |||||||||||||||||    
T  13924104 aaaaaagaagagagagaataaga 13924082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 21418539 - 21418599
Alignment:
Q  373 tcttttaattggttaaatgcaatggagaga--aaaatgaagagagagaataagagtataat 431  Q
    |||||| ||||||||||  |||||||||||  |||| ||||||||||||||||||||||||    
T  21418539 tctttttattggttaaaatcaatggagagagaaaaaggaagagagagaataagagtataat 21418599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 431
Target Start/End: Complemental strand, 23258217 - 23258096
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaacnnnnnnnnnnnctcttttaattggttaaatgcaatgg--agagaaaaatga 409  Q
    |||||||||| ||||||||||||| |||||| |||| ||||||||||||           ||||||| |||||| |||  ||||||  ||||||||| ||    
T  23258217 aaagagtagtgatatttgaacaaccatttgaaacaatttttgtgacaacttcttttttctctcttttcattggtcaaaaacaatggaaagagaaaaagga 23258118  T
Q  410 agagagagaataagagtataat 431  Q
    ||||| ||||||| ||||||||    
T  23258117 agagatagaataatagtataat 23258096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 295732 - 295684
Alignment:
Q  311 caaagagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    |||||||||||  ||||||||||||||||||| | ||||||||||||||    
T  295732 caaagagtagtgttatttgaacaactatttgagataacttttgtgacaa 295684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 5359520 - 5359476
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||    
T  5359520 gagtagtgatatttgaacatctatttgaaacaacttttgtgacaa 5359476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 26294361 - 26294313
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||||| |||||||||||  ||||||| |||||||||||||||||    
T  26294361 aaagagtagtgatatttgaacatatatttgaaacaacttttgtgacaac 26294313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 26307618 - 26307570
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||||| |||||||||||  ||||||| |||||||||||||||||    
T  26307618 aaagagtagtgatatttgaacatatatttgaaacaacttttgtgacaac 26307570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 34970322 - 34970278
Alignment:
Q  380 attggttaaatgcaatggagagaaaaatgaagagagagaataaga 424  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||    
T  34970322 attggttaaaaacaatggagagaaaaaggaagagagagaataaga 34970278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 44672125 - 44672165
Alignment:
Q  318 tagtaatatttgaacaactatttgatacaacttttgtgaca 358  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  44672125 tagtgatatttgaacaattatttgatacaacttttgtgaca 44672165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 431
Target Start/End: Complemental strand, 32175076 - 32175018
Alignment:
Q  375 ttttaattggttaaatgcaatggagaga--aaaatgaagagagagaataagagtataat 431  Q
    |||| ||||||||||  |||||||||||  ||||||||||||||||||||||| |||||    
T  32175076 tttttattggttaaaaacaatggagagagaaaaatgaagagagagaataagaggataat 32175018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 40413250 - 40413289
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaactttt 352  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  40413250 aagagtagtgatatttgaacaaccatttgatacaactttt 40413289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 426199 - 426165
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  426199 gagagaaaaaggaagagagagaataagagtataat 426165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 3989003 - 3988969
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    ||||||||||| |||||||||||||||||||||||    
T  3989003 gagagaaaaataaagagagagaataagagtataat 3988969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 7678908 - 7678870
Alignment:
Q  126 tgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  7678908 tgatatttgaacaactatttgatacaacttttgtaacaa 7678870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 16011863 - 16011924
Alignment:
Q  372 ctcttttaattggttaaatgcaatggaga--gaaaaatgaagagagagaataagagtataat 431  Q
    ||||||| ||||||||||  |||||||||  |||||||||||||||||||||| | ||||||    
T  16011863 ctcttttcattggttaaaaacaatggagagagaaaaatgaagagagagaataaaaatataat 16011924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 18538557 - 18538515
Alignment:
Q  318 tagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||| ||||||||||||||||||| | ||||||||||||||||    
T  18538557 tagtgatatttgaacaactatttggttcaacttttgtgacaac 18538515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 28473518 - 28473552
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||| ||||||||||||||||||||||||    
T  28473518 gagagaaaaaggaagagagagaataagagtataat 28473552  T

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Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 41406829 - 41406863
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    ||||||||||||||||||||||||||||| |||||    
T  41406829 gagagaaaaatgaagagagagaataagaggataat 41406863  T

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Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 27673039 - 27673002
Alignment:
Q  323 atatttgaacaactatttgatacaacttttgtgacaac 360  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  27673039 atatttgaacaactattagatataacttttgtgacaac 27673002  T

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Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 37524316 - 37524361
Alignment:
Q  119 agaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    |||| |||||||||||||||||||||||||| ||| ||||| ||||    
T  37524316 agagtagtgatatttgaacatctatttgaaataacctttgtgacaa 37524361  T

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Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 430
Target Start/End: Original strand, 40604678 - 40604711
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataa 430  Q
    |||||||||||||||| |||||||||||||||||    
T  40604678 gagagaaaaatgaagaaagagaataagagtataa 40604711  T

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Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 5502547 - 5502499
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttgtgacaac 360  Q
    |||||||||| ||||||||||||  |||||||| || ||||||||||||    
T  5502547 aaagagtagtgatatttgaacaatcatttgatataatttttgtgacaac 5502499  T

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Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 429
Target Start/End: Complemental strand, 27836278 - 27836246
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtata 429  Q
    |||||||||||||||| ||||||||||||||||    
T  27836278 gagagaaaaatgaagaaagagaataagagtata 27836246  T

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Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 30925541 - 30925581
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaacttttg 353  Q
    ||||||||| ||||||||||||| |||| ||||||||||||    
T  30925541 aagagtagtgatatttgaacaaccattttatacaacttttg 30925581  T

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Target: scaffold0057 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 39057 - 39017
Alignment:
Q  124 agtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  39057 agtgatatttgaacatctatttgaaacaacttttgtgacaa 39017  T

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Target: scaffold0057; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 39061 - 39017
Alignment:
Q  315 gagtagtaatatttgaacaactatttgatacaacttttgtgacaa 359  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||    
T  39061 gagtagtgatatttgaacatctatttgaaacaacttttgtgacaa 39017  T

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Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 31546 - 31607
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagaga--aaaatgaagagagagaataagagtataat 431  Q
    ||||||| ||||||||||  |||||||||||  |||| ||||||||||||||||||||||||    
T  31546 ctcttttcattggttaaaaacaatggagagagaaaaaggaagagagagaataagagtataat 31607  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 6525 - 6491
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||||||||||||||||||||||||    
T  6525 gagagaaaaatgaagagagagaataagagtataat 6491  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 36186 - 36138
Alignment:
Q  313 aagagtagtaatatttgaacaactatttgatacaac-ttttgtgacaac 360  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  36186 aagagtagtgatatttgaacaaccatttgatacaactttttgtgacaac 36138  T

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Target: scaffold0449 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 7946 - 7912
Alignment:
Q  397 gagagaaaaatgaagagagagaataagagtataat 431  Q
    |||||||||||||| ||||||||||||||||||||    
T  7946 gagagaaaaatgaatagagagaataagagtataat 7912  T

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Target: scaffold0449; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 8016 - 7976
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaactttt 352  Q
    |||||||||| |||||||||||| |||||||||||| ||||    
T  8016 aaagagtagtgatatttgaacaattatttgatacaattttt 7976  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 6942 - 6881
Alignment:
Q  372 ctcttttaattggttaaatgcaatggagaga--aaaatgaagagagagaataagagtataat 431  Q
    ||||||| ||||||||||  |||||||||||  |||| |||||||||||||||||| |||||    
T  6942 ctcttttcattggttaaaaacaatggagagagaaaaaggaagagagagaataagaggataat 6881  T

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Target: scaffold0508 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 11422 - 11463
Alignment:
Q  312 aaagagtagtaatatttgaacaactatttgatacaacttttg 353  Q
    |||||||||| |||||||||||||||||| | ||||||||||    
T  11422 aaagagtagtgatatttgaacaactattttagacaacttttg 11463  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 113808 - 113763
Alignment:
Q  119 agaggagtgatatttgaacatctatttgaaacaacttttgtaacaa 164  Q
    |||| |||||||||| |||||||||||||||||| |||||| ||||    
T  113808 agagtagtgatatttaaacatctatttgaaacaatttttgtgacaa 113763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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