View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17182_low_6 (Length: 384)
Name: NF17182_low_6
Description: NF17182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17182_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 28691398 - 28691159
Alignment:
| Q |
18 |
caaaggaacttgtagatttcatcaacaagatgttatggtgaggaaagagtattacacacgcgatcctaacaagaaagttgtttacgtttctaattatagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28691398 |
caaaggaacttgtagatttcatcaacaagatgttatggtaaggaaagagtattacacacgtgatcctaacaagaaagttgtttacgtttctaattatagt |
28691299 |
T |
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| Q |
118 |
ctttatcatgatcctgctgctaattggagggactcacttggtttttctatggcaccaaatccaccaaaatcagaagaatttccagaagtttgcaggnnnn |
217 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28691298 |
ctttaccatgatcctgctgctaattggagggactcacttggtttttccatggcaccaaatccaccaaaatcagaagaatttcccgaagtttgcaggtttt |
28691199 |
T |
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| Q |
218 |
nnnccttcttaatactgcttttaacattattattaaagtt |
257 |
Q |
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| T |
28691198 |
tttccttcttaatactgcttttaacgttattattaaagtt |
28691159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 28696283 - 28696088
Alignment:
| Q |
18 |
caaaggaacttgtagatttcatcaacaagatgttatggtgaggaaagagtattacacacgcgatcctaacaagaaagttgtttacgtttctaattatagt |
117 |
Q |
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|||||||||||||||||||||||||||||||| | |||||| ||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
28696283 |
caaaggaacttgtagatttcatcaacaagatgccaaggtgagaaaagagtattatacatgcgatcccaacaagaaagttgtttatgtttctaattatagt |
28696184 |
T |
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| Q |
118 |
ctttatcatgatcctgctgctaattggagggactcacttggtttttctatggcaccaaatccaccaaaatcagaagaatttccagaagtttgcagg |
213 |
Q |
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| T |
28696183 |
ctttaccatgatcctgctgctaattggagggactcacttggttttactatgacaccaaatcaaccaaaatcagaagaatttcaagaagtttgcagg |
28696088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 28691172 - 28691070
Alignment:
| Q |
275 |
ttattattaaagttaaatagcaattaaatgttgtaggatccttaaggttaagaaaattttgactttttaatttattatagaagaaaccttttagtcatat |
374 |
Q |
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||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
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| T |
28691172 |
ttattattaaagttaaataacgattaaatgttgtaaaatccttaaggttaagaaaattttaactttttaatttattatagaagaaaccttttaggcgtat |
28691073 |
T |
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| Q |
375 |
tct |
377 |
Q |
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||| |
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| T |
28691072 |
tct |
28691070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 28717601 - 28717499
Alignment:
| Q |
18 |
caaaggaacttgtagatttcatcaacaagatgttatggtgaggaaagagtattacacacgcgatcctaacaagaaagttgtttacgtttctaattatagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||| |
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| T |
28717601 |
caaaggaacttgtagatttcatcaacaagatgttagggtaaggaaagagtattacatatgtgatcctaacaagaaagttgtttatatttctaattatagt |
28717502 |
T |
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| Q |
118 |
ctt |
120 |
Q |
| |
|
||| |
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| T |
28717501 |
ctt |
28717499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 28642195 - 28642139
Alignment:
| Q |
18 |
caaaggaacttgtagatttcatcaacaagatgttatggtgaggaaagagtattacac |
74 |
Q |
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||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| |
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| T |
28642195 |
caaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacac |
28642139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 28651056 - 28651000
Alignment:
| Q |
18 |
caaaggaacttgtagatttcatcaacaagatgttatggtgaggaaagagtattacac |
74 |
Q |
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| T |
28651056 |
caaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacac |
28651000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 28670774 - 28670695
Alignment:
| Q |
22 |
ggaacttgtagatttcatcaacaagatgttatggtgaggaaagagtattacacacgcgatcctaacaagaaagttgttta |
101 |
Q |
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||||||||||||||||| |||||||||| | ||||||||| ||||| ||||| || |||| || ||| ||||||||||| |
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| T |
28670774 |
ggaacttgtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatcttaccaaaaaagttgttta |
28670695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 28674922 - 28674839
Alignment:
| Q |
18 |
caaaggaacttgtagatttcatcaacaagatgttatggtgaggaaagagtattacacacgcgatcctaacaagaaagttgttta |
101 |
Q |
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||||||||||||||||||||| |||||||||| | || |||||| ||||| ||||| || |||| | ||| ||||||||||| |
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| T |
28674922 |
caaaggaacttgtagatttcaccaacaagatgccaaggcgaggaaggagtactacacccgtgatctcaccaaaaaagttgttta |
28674839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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