View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17182_low_7 (Length: 304)

Name: NF17182_low_7
Description: NF17182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17182_low_7
NF17182_low_7
[»] chr2 (2 HSPs)
chr2 (80-300)||(26661200-26661432)
chr2 (95-188)||(6049616-6049709)
[»] chr6 (2 HSPs)
chr6 (80-300)||(21481118-21481350)
chr6 (88-203)||(19700875-19700990)
[»] chr4 (2 HSPs)
chr4 (95-188)||(13894007-13894100)
chr4 (80-116)||(20856407-20856443)
[»] chr1 (4 HSPs)
chr1 (95-188)||(44305833-44305926)
chr1 (79-214)||(29845307-29845442)
chr1 (88-170)||(22893492-22893574)
chr1 (221-263)||(22893647-22893689)
[»] scaffold0500 (1 HSPs)
scaffold0500 (80-145)||(358-423)
[»] chr7 (2 HSPs)
chr7 (95-189)||(13331863-13331957)
chr7 (95-189)||(13342778-13342872)
[»] chr5 (1 HSPs)
chr5 (95-205)||(5672318-5672428)
[»] chr3 (2 HSPs)
chr3 (80-205)||(15762290-15762415)
chr3 (196-294)||(15762179-15762277)
[»] scaffold0586 (2 HSPs)
scaffold0586 (88-203)||(9306-9421)
scaffold0586 (221-263)||(9462-9504)
[»] chr8 (3 HSPs)
chr8 (88-203)||(10637336-10637451)
chr8 (88-203)||(32718143-32718258)
chr8 (221-263)||(10637492-10637534)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 80 - 300
Target Start/End: Original strand, 26661200 - 26661432
Alignment:
Q  80 agggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttc 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661200 agggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttc 26661299  T
Q  180 ccaggaaagtctttta------------cccacgttctacccatttttcctgtctttcattcccatgagatagcatgggaaagttttatttccagggaat 267  Q
    ||||||||||||||||            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26661300 ccaggaaagtcttttacccacgttctcccccacgttctacccatttttcctgtctttcattccaatgagatagcatgggaaagttttatttccagggaat 26661399  T
Q  268 aaaaaccatgatctccaacaaaatacctcttct 300  Q
    |||||||||||||||||||||||||||||||||    
T  26661400 aaaaaccatgatctccaacaaaatacctcttct 26661432  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 6049616 - 6049709
Alignment:
Q  95 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaag 188  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  6049616 attcctaggaatctaaggctggaattaaagattgctatgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaag 6049709  T

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Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 80 - 300
Target Start/End: Original strand, 21481118 - 21481350
Alignment:
Q  80 agggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttc 179  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21481118 agggttacaaaaataattcctaggaatttaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatataccaaggaatacatttttc 21481217  T
Q  180 ccaggaaagtctttta------------cccacgttctacccatttttcctgtctttcattcccatgagatagcatgggaaagttttatttccagggaat 267  Q
     |||||||||||||||            |||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| ||||    
T  21481218 tcaggaaagtcttttacccatgttcacccccatgttctacccatttttcctgtcttttattcccctgagatagcatgggaaagttttattcccagagaat 21481317  T
Q  268 aaaaaccatgatctccaacaaaatacctcttct 300  Q
    |||||||||||||||||||||||||||||||||    
T  21481318 aaaaaccatgatctccaacaaaatacctcttct 21481350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 19700875 - 19700990
Alignment:
Q  88 aaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaa 187  Q
    |||||||||||| |||||||||||||||||||| || ||| ||||||||||||  ||||||  ||||||||||| | ||||||||| |||||||||||||    
T  19700875 aaaaataattccaaggaatctaaggctggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatacaattttcccaggaaa 19700974  T
Q  188 gtcttttacccacgtt 203  Q
    | | | ||||||||||    
T  19700975 gccatctacccacgtt 19700990  T

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Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 13894100 - 13894007
Alignment:
Q  95 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaag 188  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  13894100 attcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaag 13894007  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 20856407 - 20856443
Alignment:
Q  80 agggttacaaaaataattcctaggaatctaaggctgg 116  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  20856407 agggttagaaaaatagttcctaggaatctaaggctgg 20856443  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 44305833 - 44305926
Alignment:
Q  95 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaag 188  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||||||||    
T  44305833 attcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaagaatacatttttcccaggaaag 44305926  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 29845307 - 29845442
Alignment:
Q  79 aagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 178  Q
    |||||||||||||||||||   |||||  ||||| || |||| |||||| ||||||||||||||| |||| |||  ||||||||  ||||||| |||||     
T  29845307 aagggttacaaaaataattttaaggaaagtaaggttgaaattaaatattcctttgtttggtagattggaacaaccaaaatatgcttaggaataaatttta 29845406  T
Q  179 cccaggaaagtcttttacccacgttctacccatttt 214  Q
    | |||||||||| || ||||||||||  ||||||||    
T  29845407 ctcaggaaagtcattcacccacgttcatcccatttt 29845442  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 22893492 - 22893574
Alignment:
Q  88 aaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaat 170  Q
    |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  ||||||||||| ||||||||    
T  22893492 aaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtcaaggaat 22893574  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 22893647 - 22893689
Alignment:
Q  221 ctttcattcccatgagatagcatgggaaagttttatttccagg 263  Q
    |||| |||||||||||||||| ||||||||||||||| |||||    
T  22893647 cttttattcccatgagatagcttgggaaagttttattcccagg 22893689  T

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Target: scaffold0500 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 423 - 358
Alignment:
Q  80 agggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  423 agggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 358  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 13331957 - 13331863
Alignment:
Q  95 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaagt 189  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||| ||||||||||||||  |||||||||    
T  13331957 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgcccaggaatacatttttttcaggaaagt 13331863  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 13342872 - 13342778
Alignment:
Q  95 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaagt 189  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||  ||||||||||||||  |||||||||    
T  13342872 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacatttttttcaggaaagt 13342778  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 205
Target Start/End: Complemental strand, 5672428 - 5672318
Alignment:
Q  95 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaagtctttt 194  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||  |||||||||||||| ||||||||||  |      
T  5672428 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacattttttccaggaaagtagtaa 5672329  T
Q  195 acccacgttct 205  Q
    |||||||||||    
T  5672328 acccacgttct 5672318  T

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Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 15762415 - 15762290
Alignment:
Q  80 agggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttc 179  Q
    ||||||| || || |||||  ||||||||||||||||||| ||||||| ||||||||||||| |||| |  ||||||||||||| |||||||||||||||    
T  15762415 agggttaaaacaaaaattctcaggaatctaaggctggaatcgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttc 15762316  T
Q  180 ccaggaaagtcttttacccacgttct 205  Q
    ||||||||||  |  |||||||||||    
T  15762315 ccaggaaagtaatacacccacgttct 15762290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 294
Target Start/End: Complemental strand, 15762277 - 15762179
Alignment:
Q  196 cccacgttctacccatttttcctgtctttcattcccatgagatagcatgggaaagttttatttccagggaataaaaaccatgatctccaacaaaatacc 294  Q
    ||||||||| ||| ||||||| |  |||  |||||||||| ||||| |||||||| |||||| ||| |||||  |||||||||||| ||| ||||||||    
T  15762277 cccacgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagatttattcccatggaatggaaaccatgatcttcaataaaatacc 15762179  T

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Target: scaffold0586 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 9306 - 9421
Alignment:
Q  88 aaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaa 187  Q
    |||||||||| | |||||||||||| ||||||| || ||| ||||||||||||| ||||||  ||||||||||| | |||||| || |||||||||||||    
T  9306 aaaaataatttcaaggaatctaaggttggaattaaacattcctttgtttggtaggtgggaaccacacaaatatgtccaggaatgcaattttcccaggaaa 9405  T
Q  188 gtcttttacccacgtt 203  Q
    | | | ||||||||||    
T  9406 gccatctacccacgtt 9421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 9462 - 9504
Alignment:
Q  221 ctttcattcccatgagatagcatgggaaagttttatttccagg 263  Q
    |||| |||||||||||||||| ||||||||||||||| |||||    
T  9462 cttttattcccatgagatagcttgggaaagttttattcccagg 9504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 10637336 - 10637451
Alignment:
Q  88 aaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaa 187  Q
    |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  ||||||||||| | |||||| || |||||||||||||    
T  10637336 aaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatgcaattttcccaggaaa 10637435  T
Q  188 gtcttttacccacgtt 203  Q
    | | | ||||||||||    
T  10637436 gccatctacccacgtt 10637451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 32718258 - 32718143
Alignment:
Q  88 aaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttcccaggaaa 187  Q
    |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  ||||||||||| | |||||| || |||||||||||||    
T  32718258 aaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtctaggaatgcaattttcccaggaaa 32718159  T
Q  188 gtcttttacccacgtt 203  Q
    | | | ||||||||||    
T  32718158 gccatctacccacgtt 32718143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 10637492 - 10637534
Alignment:
Q  221 ctttcattcccatgagatagcatgggaaagttttatttccagg 263  Q
    |||| |||||||||||||||| ||||||||||||||| |||||    
T  10637492 cttttattcccatgagatagcttgggaaagttttattcccagg 10637534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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