View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17183_high_13 (Length: 322)
Name: NF17183_high_13
Description: NF17183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17183_high_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 53 - 322
Target Start/End: Complemental strand, 1821058 - 1820788
Alignment:
| Q |
53 |
tatattagaaggaaggcgaagaaattttggtgttcagctcataaatcaaacctaaatcctttcaaataagtcatactttagtagagtttattaaccatta |
152 |
Q |
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| T |
1821058 |
tatattagaaggaaggcgaagaaattttggtgttcagctcataaatcaaacctaaatcctttcaaacaagtcatactttagtagagtttattaaccatta |
1820959 |
T |
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| Q |
153 |
agttcaatcatttacttatttaagaa-tattataatattaaaattttacgattccttctttatagatggacaaggcttcaatacttcgagaagcaattga |
251 |
Q |
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| T |
1820958 |
agttcaatcatttacttatttaagaaatattataatattaaaattttacgattccttctttatagatggacaaggcttcattacttcgagaagcgattga |
1820859 |
T |
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| Q |
252 |
ttatgtgaaacaacttaaagaacgtgttgaagaactcgagaaacaagacaaaaatgttgttgtcatgccgg |
322 |
Q |
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| T |
1820858 |
ttatgtgaaacaacttaaagaacatgttgaagagctcgagaaacaagacaaaaatgttggtgtcacgccgg |
1820788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 190 - 322
Target Start/End: Complemental strand, 1841184 - 1841052
Alignment:
| Q |
190 |
taaaattttacgattccttctttatagatggacaaggcttcaatacttcgagaagcaattgattatgtgaaacaacttaaagaacgtgttgaagaactcg |
289 |
Q |
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| T |
1841184 |
taaaattttaatattccatttttatagacagacaaggcttcaatacttcgagaagcaattgattatgtgaaacaacttaaagaacgtgttgatgagctcg |
1841085 |
T |
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| Q |
290 |
agaaacaagacaaaaatgttgttgtcatgccgg |
322 |
Q |
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| T |
1841084 |
agaaacaagacaaaaatgttggtgtcacgccgg |
1841052 |
T |
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