View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17183_high_14 (Length: 321)

Name: NF17183_high_14
Description: NF17183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17183_high_14
NF17183_high_14
[»] chr7 (1 HSPs)
chr7 (30-321)||(49007884-49008175)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 49008175 - 49007884
Alignment:
Q  30 cctcttgagctataactatccacacttggtgctggttttgtacctaaaacaattttattaaattgcatgcttgcttttggattagtattgcacttaatga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008175 cctcttgagctataactatccacacttggtgctggttttgtacctaaaacagttttattaaattgcatgcttgcttttggattagtattgcacttaatga 49008076  T
Q  130 aatccttgataagttctccattaattggattcnnnnnnntagatggaaacttagtttgaatgtaatatgttatatcctcagaactatttgatatgaaaac 229  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008075 aatccttgataagttctccattaattggattcaaaaaaatagatggaaacttagtttgaatgtaatatgttatatcctcagaactatttgatatgaaaac 49007976  T
Q  230 acccgcaacaacttttattctgtccaagttatccacttgagtagcaagtgttcggttcttgtcttcacacaccacgatcttgtttcttgctc 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49007975 acccgcaacaacttttattctgtccaagttatccacttgagtagcaagtgttcggttcttgtcttcacacaccacgatcttgtttcttgctc 49007884  T

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