View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17183_high_7 (Length: 347)
Name: NF17183_high_7
Description: NF17183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17183_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 27 - 318
Target Start/End: Original strand, 47038144 - 47038435
Alignment:
| Q |
27 |
tcaggttctggaaacttgttcaaatcaggtttcacatcagcgttgaattgatcggaatcagaacgagaagaagcttcaagagccgcttgaagagcatcaa |
126 |
Q |
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| T |
47038144 |
tcaggttctggaaacttgttcaaatcaggtttcacatcagcgttgaattgatcggaatcagaacgagaagaagcttgaagagccgcttgaagagcatcaa |
47038243 |
T |
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| Q |
127 |
ctctagcaccgactttggtagcttttttgcgtattaaatcagcagacatgttaccttgctgaatagaaccgtcgttgttttcttcgtcgtcttcgagcaa |
226 |
Q |
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| T |
47038244 |
ctctagcaccgactttggtagcttttttgcgtattaaatcagcagacatgttaccttgctgaatagaaccgtccttgttttcttcgtcgtcttcgagcaa |
47038343 |
T |
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| Q |
227 |
taattcggggaaattaagacgagccgtaggacctcttaaatagaatacggcggtgtcgtaggcacgagcagcagctaccggagtgatgtaag |
318 |
Q |
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| T |
47038344 |
taattcggggaaattaagacgagccgtaggacctcttaaatagaatacggcggtgtcgtaggcacgagcagcagctaccggagtgatgtaag |
47038435 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 6026885 - 6026845
Alignment:
| Q |
111 |
gcttgaagagcatcaactctagcaccgactttggtagcttt |
151 |
Q |
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| T |
6026885 |
gcttgaagagcatcaactctagcaccaacttcagtagcttt |
6026845 |
T |
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