View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17184_high_1 (Length: 870)

Name: NF17184_high_1
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17184_high_1
NF17184_high_1
[»] chr1 (2 HSPs)
chr1 (1-806)||(4620417-4621222)
chr1 (790-863)||(4621440-4621513)
[»] chr3 (1 HSPs)
chr3 (329-673)||(47887446-47887790)


Alignment Details
Target: chr1 (Bit Score: 798; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 1 - 806
Target Start/End: Original strand, 4620417 - 4621222
Alignment:
Q  1 ctgtccactaaacccgatcgggttgtattttatttggaaggacctgctcctggaattgacttgcttataagatcagtagagatcaactgttccattccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4620417 ctgtccactaaacccgatcgggttgtattttatttggaaggacctgctcctggaattgacttgcttataagatcagtagagatcaactgttccattccaa 4620516  T
Q  101 atgacaatgtatatcatacatgaaattatgcatttcagatactgttatttctttatggaattctacatattggcaaagtttttattacttctttaattgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  4620517 atgacaatgtatatcatacatgaaattatgcatttcagatactgttatttctttatggaattctacatattggcaaaaattttattacttctttaattgt 4620616  T
Q  201 taaattgaacttgtattgagcctattattgtttcactctttaactttttgtgaaatctttatgttttaataacaccactaactggtgtaccttttcctcg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4620617 taaattgaacttgtattgagcctattattgtttcactctttaactttttgtgaaatctttatgttttaataacaccactaactggtgtaccttttcctcg 4620716  T
Q  301 tatttcagaagttcataagtacagaagcatgtgtttctactggagatgaaagcatcataataaacccacaatttgaggatggcctgaataattggtctgg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4620717 tatttcagaagttcataagtacagaagcatgtgtttctactggagatgaaagcatcataataaacccacaatttgaggatggcctgaataattggtctgg 4620816  T
Q  401 aaggagctgcaagattgtgttgcatgattccatggcagatggtaaaattgttccaaagtctgggaaatattttgcatgcgcaacagaacgaacacagttc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4620817 aaggagctgcaagattgtgttgcatgattccatggcagatggtaaaattgttccaaagtctgggaaatattttgcatgcgcaacagaacgaacacagttc 4620916  T
Q  501 tggaatggaattcagcaggagataactggacgtgtgcagcgcaagttggcctatgagatcactgctttagttcgaatatatggcaacaatgtcactaatg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4620917 tggaatggaattcagcaggagataactggacgtgtgcagcgcaagttggcctatgagatcactgctttagttcgaatatatggcaacaatgtcactaatg 4621016  T
Q  601 ccgatgtacgagctactttgtgggttcaaacaccagacctccgagagcagtatataggcattgcaaagttagtcttcacattatttttgctatagattta 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4621017 ccgatgtacgagctactttgtgggttcaaacaccagacctccgagagcagtatataggcattgcaaagttagtcttcacattatttttgctatagattta 4621116  T
Q  701 attcatatacatcgtcctagaaatattttttacactgttagtcaattgtatgattcagccatgaatttcagatagactcttgaggcatatgatttttctg 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4621117 attcatatacatcgtcctagaaatattttttacactgttagtcaattgtatgattcagccatgaatttcagatagactcttgaggcatatgatttttctg 4621216  T
Q  801 tttatt 806  Q
    ||||||    
T  4621217 tttatt 4621222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 790 - 863
Target Start/End: Original strand, 4621440 - 4621513
Alignment:
Q  790 tgatttttctgtttattattcttgaaactggataaaaataacaaaaggaaacttactgtagtataatatagcca 863  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  4621440 tgatttttctgtttattattcttgaaactggataaaaataacaaaaggaaacttactgtagtatgatttagcca 4621513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 329 - 673
Target Start/End: Complemental strand, 47887790 - 47887446
Alignment:
Q  329 atgtgtttctactggagatgaaagcatcataataaacccacaatttgaggatggcctgaataattggtctggaaggagctgcaagattgtgttgcatgat 428  Q
    ||||||||| ||||  || |||| ||||||| |||| ||  | || ||||||||| ||||||||||| |||||||  ||||||||||||   | |||||     
T  47887790 atgtgtttccactgacgacgaaaacatcatactaaatcctgagttcgaggatggcttgaataattggactggaagaggctgcaagattgcagtacatgaa 47887691  T
Q  429 tccatggcagatggtaaaattgttccaaagtctgggaaatattttgcatgcgcaacagaacgaacacagttctggaatggaattcagcaggagataactg 528  Q
    ||||||||| |||| |||||  |||| || || |||||||  |||||||  ||||| ||||| |||||   |||||||||||||||||| || || ||||    
T  47887690 tccatggcaaatgggaaaatccttccgaaatccgggaaattctttgcatctgcaaccgaacgcacacaaagctggaatggaattcagcaagaaatcactg 47887591  T
Q  529 gacgtgtgcagcgcaagttggcctatgagatcactgctttagttcgaatatatggcaacaatgtcactaatgccgatgtacgagctactttgtgggttca 628  Q
    |||| |||||||||||| | ||||||||| |||||||||||||||| |||| ||| ||||||||||||| | | |||||||| ||||| ||||  |||||    
T  47887590 gacgagtgcagcgcaagcttgcctatgaggtcactgctttagttcggatatttgggaacaatgtcactacttctgatgtacgtgctacgttgtatgttca 47887491  T
Q  629 aacaccagacctccgagagcagtatataggcattgcaaagttagt 673  Q
    || |||||| || |||||||| |||||||||||||| ||||||||    
T  47887490 aaaaccagatcttcgagagcaatatataggcattgccaagttagt 47887446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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