View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_high_13 (Length: 418)
Name: NF17184_high_13
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 14 - 401
Target Start/End: Original strand, 11954102 - 11954490
Alignment:
| Q |
14 |
ttctacagggggtctagtttgttttgcgg-cgacggttatcttagttcaattttatcttttgcggaagacctttatcgtagaacaattttgtatgtttgt |
112 |
Q |
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| T |
11954102 |
ttctgcagggggtctagtttgttttgaggacgacggttatcttagttcaattttttcttttgcggaagacctttatcgtagaacaattttgtatgtttgt |
11954201 |
T |
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| Q |
113 |
aatccaataactcaatccttcaagaagttgccgattgggtcaattatgatttggcgtcttttaggaatgacaatgaatgggagtgcaggttacagagtcc |
212 |
Q |
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| T |
11954202 |
aatccaataactcaatccttcaagaagttgccgattgggtcaattaagatttggcgtcttttagggatgacaatgaatgtgagtgcaggctacagagtcc |
11954301 |
T |
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| Q |
213 |
taaaattgggatgtgatagaacatttgaaatttacgattcaataacgaagtgttggagccatctaaaaaagatacctatatgtattaaggagctagacga |
312 |
Q |
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| T |
11954302 |
taaaattgggatgtgatagaacatttgaaatttacgattcaataacgaagtgttggagccatctaaaaaagatacctatatgtattaagaagctagacga |
11954401 |
T |
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| Q |
313 |
tactatttccaacattgtttccattgacaccactctttatttcaagcataaggatccagaagggattagttcttgtgatacgtcaactg |
401 |
Q |
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| T |
11954402 |
tactatttccaacattgtttccattgacaccactctttatttcaagcataaggatccagaagggattagttcttgtgatacgtcaactg |
11954490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 95 - 302
Target Start/End: Original strand, 11980322 - 11980526
Alignment:
| Q |
95 |
acaattttgtatgtttgtaatccaataactcaatccttcaagaagttgccgattgggtcaattatgatttggcgtcttttaggaatgacaatgaatggga |
194 |
Q |
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| T |
11980322 |
acaaatttgtgtgtttgtaatccaatgactaaatccttcaagaagttgccgaatggttggattaagcggtggtgtcatttagggatgacaatgaatggga |
11980421 |
T |
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| Q |
195 |
gtgcaggttacagagtcctaaaattgggatgtgatagaacatttgaaatttacgattcaataacgaagtgttggagccatctaaaaaagatacctatatg |
294 |
Q |
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| T |
11980422 |
gtgcagactacagggtcctaaaattgggttg---tagaaaatatgaaatttacgattcagtaacaaaatgctggagtcatctaggaaagatacctgaatg |
11980518 |
T |
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| Q |
295 |
tattaagg |
302 |
Q |
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| T |
11980519 |
tattaagg |
11980526 |
T |
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