View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_high_21 (Length: 299)
Name: NF17184_high_21
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 53296997 - 53297270
Alignment:
| Q |
1 |
aggtgggggtgtatttagaaagaccaatgagaagtacaatgaagcagccaagttattcaattccaaactctccaaggagttggattatcttcactctaac |
100 |
Q |
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| T |
53296997 |
aggtgggggtgtatttagaaagaccaatgagaagtacaatgaagcagccaagttattcaattccaaactctccaaggagttggattatcttcactctaac |
53297096 |
T |
|
| Q |
101 |
ttgcccaacagtaacgtcatttatattgatatttacagtcccttacttgatataattctcaagccacaaaaatatggtaagtaatttaattgctactgta |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
53297097 |
ttgcccaatagtaacgtcatttatattgatatttacagtcccttacttgatatcattctcaagccacaaaaatatggtaagtaaattaattgcta----- |
53297191 |
T |
|
| Q |
201 |
tagtaaaatctaatcattgatgatt-aattaataagttagttagttaattcctaacttcattaaatgcatgcaggatataaa |
281 |
Q |
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|||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53297192 |
---taaaatctaatcattgatgattaaattaattaagtagttagttaattcctaacttcattaaatgcatgcaggatataaa |
53297270 |
T |
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