View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_high_24 (Length: 243)
Name: NF17184_high_24
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_high_24 |
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| [»] scaffold0170 (2 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0170 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 7963 - 7827
Alignment:
| Q |
1 |
aataacaaagaaaaaacatggaacaaacctggagaaagtgaagaggaggaggaatgaaaatggagactgatagttgagagaggaagaggcgtaaattaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
7963 |
aataacaaagaaaaaacatggaacaaacctggaggaagtgaagaggaggaggaatgaaaatggagactgagagttgagagaggaagaggcgcaaattaag |
7864 |
T |
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| Q |
101 |
agaggtagaagcaaatgaaactgaaacagagattgag |
137 |
Q |
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| T |
7863 |
agagggagaagcaaatgaaactgaaacagagattgag |
7827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 7796 - 7728
Alignment:
| Q |
136 |
agagaaggagaagactgaaaaatagaaaatttgtat--gcgcctgaacatttgccccaattctgccccc |
202 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
7796 |
agagaaggagaagaccgaaaaatagaaaatttgtatgcgcgcctgaacatttgcctcaattctgccccc |
7728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 10802217 - 10802334
Alignment:
| Q |
1 |
aataacaaagaaaaaacatggaacaaacctggagaaagtgaagaggaggaggaatgaaaatggagactgatagttgagagaggaagaggcgtaaattaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||| || |
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| T |
10802217 |
aataacaaagaaaaaacatggaacaaacctggaggaagtgaagaggagaaggaatgaaaatggagactaagagttgagagaggaagaggcgcaaattgag |
10802316 |
T |
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| Q |
101 |
agaggtagaagcaaatga |
118 |
Q |
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| T |
10802317 |
agagggagaagcaaatga |
10802334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 13569791 - 13569895
Alignment:
| Q |
1 |
aataacaaagaaaaaacatggaacaaacctggagaaagtgaagaggaggaggaatgaaaatggagactgatagttgagagaggaagaggcgtaaattaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| ||||| || |
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| T |
13569791 |
aataacaaagaaaaaacatggaacaaacctggagaaagtgaagaggagagggaatgaaaatggagactaagagttgagagaggaagaggcgcaaattgag |
13569890 |
T |
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| Q |
101 |
agagg |
105 |
Q |
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||||| |
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| T |
13569891 |
agagg |
13569895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 13569965 - 13570030
Alignment:
| Q |
136 |
agagaaggagaagactgaaaaatagaaaatttgtatgcgcctgaacatttgccccaattctgcccc |
201 |
Q |
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||||||||||||||||||||||||||| |||| || |||||||||||||||| ||||| |||||| |
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| T |
13569965 |
agagaaggagaagactgaaaaatagaacatttttacacgcctgaacatttgcctcaattttgcccc |
13570030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 10802388 - 10802451
Alignment:
| Q |
136 |
agagaaggagaagactgaaaaatagaaaatttgtatgcgcctgaacatttgccccaattctgccc |
200 |
Q |
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||||||||||||||||||||||||||| |||| || || ||||||||||||| ||||| ||||| |
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| T |
10802388 |
agagaaggagaagactgaaaaatagaacatttttacacg-ctgaacatttgcctcaattttgccc |
10802451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 141621 - 141538
Alignment:
| Q |
3 |
taacaaagaaaaaacatggaacaaacctggagaaagtgaagaggaggaggaatgaaaatggagactgatagttgagagaggaag |
86 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| | |||||| |||||||| |
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| T |
141621 |
taacaaagaaaaaacatggaacaaacctcgaggaagtgaagaggagaaggaatgaaaatggagacgaagagttgacagaggaag |
141538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25131057 - 25131110
Alignment:
| Q |
1 |
aataacaaagaaaaaacatggaacaaacctggagaaagtgaagaggaggaggaa |
54 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||| ||||| |
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| T |
25131057 |
aataacaaagaaaaaacatggaacaaacctgggggaagtgaagaggagaaggaa |
25131110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 25131452 - 25131546
Alignment:
| Q |
50 |
aggaatgaaaatggagactgatagttgagagaggaagaggcgtaaattaagagaggtagaagc-------aaatgaaactgaaacagagattgag |
137 |
Q |
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||||||||||||||||||| | |||||||||||||||||||| ||||| ||||||| ||| || | ||||||||||||||||||||||| |
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| T |
25131452 |
aggaatgaaaatggagactaagagttgagagaggaagaggcgcaaattgagagaggaagaggcgcaaatgatatgaaactgaaacagagattgag |
25131546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 25131577 - 25131640
Alignment:
| Q |
136 |
agagaaggagaagactgaaaaatagaaaatttgtatgcgcctgaacatttgccccaattctgccc |
200 |
Q |
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||||||||||||||||||||||||| | |||| || |||||||||||||||| ||||| ||||| |
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| T |
25131577 |
agagaaggagaagactgaaaaatag-acatttttacacgcctgaacatttgcctcaattttgccc |
25131640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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