View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_high_26 (Length: 236)
Name: NF17184_high_26
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 49449214 - 49449436
Alignment:
| Q |
1 |
ctgtctcttaaagaatggaaaaaggaaaaccttgtggttttgaaaattaatatgcatttcaaattgtacaatttctgattttgatttattgagtcgacct |
100 |
Q |
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| T |
49449214 |
ctgtctcttaaagaatggaaaaaggaaaaccttgtggttttgaaaattaatatgcatttcaaattgtacaatttctgattttgatttattgagtcgacct |
49449313 |
T |
|
| Q |
101 |
tagaaac-nnnnnnnngaatcctcatactttaactaactcttaaggagtgaacttcaaattgcacctttctctaattgttaccaattctttatttaagaa |
199 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49449314 |
tagaaacaaaaaaaaagaatcctcatactttaactaactcttaaggagtgaacttcaaattgcacctttctctaattgttaccgattctttatttaagaa |
49449413 |
T |
|
| Q |
200 |
tacattaatcatttcttctattt |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
49449414 |
tacattaatcatttcttctattt |
49449436 |
T |
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