View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17184_high_3 (Length: 742)

Name: NF17184_high_3
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17184_high_3
NF17184_high_3
[»] chr6 (9 HSPs)
chr6 (361-720)||(24661737-24662099)
chr6 (441-486)||(10153552-10153597)
chr6 (300-342)||(6613684-6613726)
chr6 (300-356)||(24661703-24661758)
chr6 (282-350)||(3148824-3148893)
chr6 (286-342)||(4104331-4104387)
chr6 (301-364)||(18306573-18306637)
chr6 (301-364)||(30341508-30341572)
chr6 (278-337)||(25441807-25441866)
[»] chr7 (8 HSPs)
chr7 (379-720)||(33198562-33198906)
chr7 (282-344)||(23402045-23402107)
chr7 (278-344)||(4902633-4902699)
chr7 (277-344)||(7743243-7743310)
chr7 (303-344)||(22955007-22955048)
chr7 (301-344)||(4618447-4618490)
chr7 (278-337)||(25470741-25470800)
chr7 (304-343)||(37853990-37854029)
[»] chr4 (12 HSPs)
chr4 (89-268)||(16201150-16201332)
chr4 (273-356)||(9409525-9409609)
chr4 (313-364)||(2266561-2266613)
chr4 (305-364)||(17612626-17612686)
chr4 (300-343)||(28292386-28292429)
chr4 (301-342)||(2708205-2708246)
chr4 (301-342)||(9743902-9743943)
chr4 (301-364)||(22721943-22722007)
chr4 (278-337)||(5914939-5914998)
chr4 (278-320)||(25184491-25184533)
chr4 (276-354)||(9813912-9813992)
chr4 (301-342)||(14246507-14246548)
[»] chr5 (8 HSPs)
chr5 (278-344)||(21321063-21321129)
chr5 (278-344)||(22616803-22616869)
chr5 (300-362)||(10237707-10237769)
chr5 (301-364)||(10053883-10053948)
chr5 (278-344)||(36055544-36055610)
chr5 (278-337)||(8762865-8762924)
chr5 (301-330)||(12080426-12080455)
chr5 (301-342)||(25654663-25654704)
[»] chr2 (11 HSPs)
chr2 (278-344)||(6178087-6178153)
chr2 (278-338)||(17244777-17244837)
chr2 (300-344)||(18514423-18514467)
chr2 (301-362)||(59467-59529)
chr2 (305-342)||(41713476-41713513)
chr2 (305-344)||(18779103-18779142)
chr2 (277-344)||(39788279-39788345)
chr2 (278-364)||(41644165-41644252)
chr2 (311-364)||(18059064-18059118)
chr2 (301-342)||(19073667-19073708)
chr2 (317-354)||(22981845-22981882)
[»] chr1 (9 HSPs)
chr1 (300-356)||(47555055-47555112)
chr1 (278-364)||(5500645-5500732)
chr1 (304-344)||(16135636-16135676)
chr1 (276-342)||(10598200-10598266)
chr1 (304-364)||(28012995-28013056)
chr1 (273-329)||(42663227-42663283)
chr1 (279-343)||(43579561-43579625)
chr1 (300-342)||(4146711-4146753)
chr1 (300-356)||(3120553-3120610)
[»] chr8 (12 HSPs)
chr8 (303-343)||(3859359-3859399)
chr8 (279-342)||(28220703-28220766)
chr8 (272-342)||(6446175-6446245)
chr8 (301-342)||(4108607-4108648)
chr8 (303-344)||(7291032-7291073)
chr8 (281-342)||(18756339-18756400)
chr8 (301-342)||(23176479-23176520)
chr8 (301-342)||(30650927-30650968)
chr8 (301-339)||(3038723-3038761)
chr8 (278-320)||(5299717-5299759)
chr8 (278-344)||(34686088-34686153)
chr8 (278-320)||(43643366-43643408)
[»] chr3 (12 HSPs)
chr3 (285-364)||(31706496-31706576)
chr3 (275-356)||(435308-435387)
chr3 (300-344)||(7568417-7568461)
chr3 (303-342)||(7758129-7758168)
chr3 (301-344)||(32180443-32180486)
chr3 (305-342)||(40640327-40640364)
chr3 (273-329)||(23165286-23165342)
chr3 (305-367)||(11872801-11872864)
chr3 (305-340)||(19606610-19606645)
chr3 (301-344)||(38392320-38392363)
chr3 (276-364)||(42205423-42205513)
chr3 (301-343)||(49359320-49359363)
[»] scaffold0001 (1 HSPs)
scaffold0001 (303-353)||(66074-66125)
[»] scaffold0003 (1 HSPs)
scaffold0003 (321-362)||(108021-108062)
[»] scaffold0200 (1 HSPs)
scaffold0200 (300-344)||(24509-24553)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 361 - 720
Target Start/End: Original strand, 24661737 - 24662099
Alignment:
Q  361 tagtataactttgatgccatgtgataggcatgtgcaaaactcttgaatgtgatcttcgaatgggaggcttcagtttggacgttaaccgtgtggcaagggc 460  Q
    |||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||    
T  24661737 tagtataactttgatgtcatgtgaaagacatgtgcaaaactcatgaatgtgatcttcgaatgggagccttcagtttggaagttaatcgtgtggcaagggc 24661836  T
Q  461 tactgtccttagaggttgggaagcttgagatc---ttgttgctggttggaataaaagagagcttttagtctcagtttcacttattctttttgtcaaaaag 557  Q
    |||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||| |||||||||||  ||||||||||    
T  24661837 tactgtccttagtggttgggaagcttgagatcttgttgttgctggttggaataaaagagagcttttggtctcagttgcacttattcttgctgtcaaaaag 24661936  T
Q  558 ttttgttgcttgctttcatgtgttgagtgaaccgt--attttcaccctaaattttatcacagattaaagatgagggttccatctaatattcttggattaa 655  Q
     ||  ||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  24661937 att--ttg-ttgctttcatgtgttgagtgaaccgtacattttcaccctaaattttatcacagattaaagatgagggttccatgtactattcttggattaa 24662033  T
Q  656 cattccatttgcttaatgagttagaatctacttgtttttactc-ttaagagtttttacttcatcta 720  Q
    |||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||||| ||||||    
T  24662034 cattccattttcttaatgagttagaatctacttgttttaactctttaagagattttactccatcta 24662099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 10153552 - 10153597
Alignment:
Q  441 gttaaccgtgtggcaagggctactgtccttagaggttgggaagctt 486  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  10153552 gttaaccgtgtagcaagggctactgtccttagaggttgggaagctt 10153597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 6613684 - 6613726
Alignment:
Q  300 ctgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  6613684 ctgacttttttgaaaaagttattttgtttagtcaatagtataa 6613726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 24661703 - 24661758
Alignment:
Q  300 ctgacttttttgaaaaagttattttgtttagccaatagtataactttgatgccatgt 356  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |||||    
T  24661703 ctgactttttt-aaaaagttattttatttagtcaatagtataactttgatgtcatgt 24661758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 3148824 - 3148893
Alignment:
Q  282 tatggtgcagtcatagatctgacttttttgaaaa-agttattttgtttagccaatagtataactttgatg 350  Q
    ||||||||||||| | |  | ||||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  3148824 tatggtgcagtcaaaaaattaacttttttgaaaaaagttattttatttagctaatagtataactttgatg 3148893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 4104387 - 4104331
Alignment:
Q  286 gtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    ||||||||| | | ||||||||||||||||||||||||||| | | |||||||||||    
T  4104387 gtgcagtcagaaaactgacttttttgaaaaagttattttgtcttgtcaatagtataa 4104331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 18306573 - 18306637
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataact-ttgatgccatgttagctagt 364  Q
    ||||||||||| ||| || |||||||||||||||||| |||| | |||||||||||| |||||||    
T  18306573 tgacttttttggaaatgtcattttgtttagccaatagaataaatgttgatgccatgtcagctagt 18306637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 30341572 - 30341508
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataact-ttgatgccatgttagctagt 364  Q
    |||||| ||||| |||||||||||||||||||| |||||||| |  ||||| |||||||||||||    
T  30341572 tgacttgtttgagaaagttattttgtttagccagtagtataattgctgatgtcatgttagctagt 30341508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 25441866 - 25441807
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatag 337  Q
    ||||||||||||||||| | |  |||||||||| ||||||| |||||||||| |||||||    
T  25441866 cttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatag 25441807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 379 - 720
Target Start/End: Original strand, 33198562 - 33198906
Alignment:
Q  379 atgtgataggcatgtgcaaaactcttgaatgtgatcttcgaatgggaggcttcagtttggacgttaaccgtgtggcaagggctactgtccttagaggttg 478  Q
    |||||| || |||||||||||||| ||||||||||||||||||||||| ||||||| |||  ||||||||||||||||| ||||||||||||||||||||    
T  33198562 atgtgaaagacatgtgcaaaactcatgaatgtgatcttcgaatgggagccttcagtctgggagttaaccgtgtggcaagagctactgtccttagaggttg 33198661  T
Q  479 ggaagcttgagatctt---------gttgctggttggaataaaagagagcttttagtctcagtttcacttattctttttgtcaaaaagttttgttgcttg 569  Q
    ||||||||||||||||         ||||||| ||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||  || |||    
T  33198662 ggaagcttgagatcttcatcttgtagttgctgcttggaataaaagagagcttttagtctcagttgcacttattcttgctgtcaaaaagtttt--tg-ttg 33198758  T
Q  570 ctttcatgtgttgagtgaaccgtattttcaccctaaattttatcacagattaaagatgagggttccatctaatattcttggattaacattccatttgctt 669  Q
    |||||||||||||||||||| || |||||||||||||||||||||  ||||||||||||||||||||| || |||| |||||||||||||||||||||||    
T  33198759 ctttcatgtgttgagtgaactgtgttttcaccctaaattttatca--gattaaagatgagggttccatgtactattattggattaacattccatttgctt 33198856  T
Q  670 aatgagttagaatctacttgtttttactcttaagagtttttacttcatcta 720  Q
    ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  33198857 aatgagttagaatctacttgttttttctc-taaaagtttttcctccatcta 33198906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 23402045 - 23402107
Alignment:
Q  282 tatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    ||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||||    
T  23402045 tatggtgcagtcaaaaaactgacttttttaaaaaagttattttgtttagccaatagtataact 23402107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 4902699 - 4902633
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    ||||||||||| ||||| | |  |||||||||||||||||||||||||||||| |||||||||||||    
T  4902699 cttctatggtgaagtcagaaaattgacttttttgaaaaagttattttgtttagtcaatagtataact 4902633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 7743310 - 7743243
Alignment:
Q  277 acttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    ||||||| |||| ||||| | ||||||||||| |  |||||||||||||||||| |||||||||||||    
T  7743310 acttctacggtggagtcagaaatctgacttttctagaaaagttattttgtttagtcaatagtataact 7743243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 22955007 - 22955048
Alignment:
Q  303 acttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  22955007 acttttttaaaaaagttattttgtttagcctatagtataact 22955048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 344
Target Start/End: Original strand, 4618447 - 4618490
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||    
T  4618447 tgacttttttgaaaaacttattttgtttaaccaatggtataact 4618490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 25470800 - 25470741
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatag 337  Q
    ||||||||||||||||| | |  |||||||||| ||||||| |||||||||| |||||||    
T  25470800 cttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatag 25470741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 343
Target Start/End: Original strand, 37853990 - 37854029
Alignment:
Q  304 cttttttgaaaaagttattttgtttagccaatagtataac 343  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  37853990 cttttttggaaaagttattttgtttagtcaatagtataac 37854029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 6e-70; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 89 - 268
Target Start/End: Original strand, 16201150 - 16201332
Alignment:
Q  89 aagtcaagagtcaagacaaaaacattaggataatagtagcagccacgctgtaaagtatatttttc-tgtgctaattaatgttgatattatctctacaatg 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  16201150 aagtcaagagtcaagacaaaaacattaggataatagtagcagccacgctgtaaagtatatttttcctgtgctaattaatgttgagattatctctacaatg 16201249  T
Q  188 catatttgacatttttaagttgcgtaagaaagagagtttatgtcccgtga-cgtagct-agttggtaggacaatgcattatta 268  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||| |||| | ||||| ||||||||||||||||||||||||    
T  16201250 catatttcacatttttaagttgcgtaacaaagagagtttatctcctgtgaccatagctcagttggtaggacaatgcattatta 16201332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 273 - 356
Target Start/End: Complemental strand, 9409609 - 9409525
Alignment:
Q  273 gggcacttctatggt-gcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataactttgatgccatgt 356  Q
    ||||||||||| ||| ||||||| | | ||||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||    
T  9409609 gggcacttctaaggttgcagtcagaaaactgacttttttgaaagagttattttgattagtcaatagtataactttgatgtcatgt 9409525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 2266561 - 2266613
Alignment:
Q  313 aaaagttattttgtttagccaatagtataact-ttgatgccatgttagctagt 364  Q
    |||||||||||||||||||||||||||||||| | |||||||||| |||||||    
T  2266561 aaaagttattttgtttagccaatagtataactgtcgatgccatgtcagctagt 2266613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 305 - 364
Target Start/End: Complemental strand, 17612686 - 17612626
Alignment:
Q  305 ttttttgaaaaagttattttgtttagccaatagtataact-ttgatgccatgttagctagt 364  Q
    |||||||||||||||||||| ||||||||||||||||||| | |||| ||||| |||||||    
T  17612686 ttttttgaaaaagttattttatttagccaatagtataactgtcgatgtcatgtcagctagt 17612626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 28292386 - 28292429
Alignment:
Q  300 ctgacttttttgaaaaagttattttgtttagccaatagtataac 343  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||    
T  28292386 ctgacttttttaaaaaagttattttatttagccaatagtataac 28292429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 2708246 - 2708205
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  2708246 tgacttttttaaaaaagttattttgtttagtcaatagtataa 2708205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 9743943 - 9743902
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    ||||||||||||||||||||||||||||| |||||| |||||    
T  9743943 tgacttttttgaaaaagttattttgtttaaccaataatataa 9743902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 22721943 - 22722007
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataact-ttgatgccatgttagctagt 364  Q
    ||||||||||| |||||| |||||||||||||||| | |||| | |||||||||||| |||||||    
T  22721943 tgacttttttggaaaagtcattttgtttagccaatggaataaatgttgatgccatgtcagctagt 22722007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 5914939 - 5914998
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatag 337  Q
    ||||||||||||||||| | |  |||||||||| ||||||| |||||||||| |||||||    
T  5914939 cttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatag 5914998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 25184533 - 25184491
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagtta 320  Q
    ||||||||||||||||| | | |||||||||||||||||||||    
T  25184533 cttctatggtgcagtcagaaaactgacttttttgaaaaagtta 25184491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 9813912 - 9813992
Alignment:
Q  276 cacttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataac--tttgatgccat 354  Q
    |||||||| |||||||| ||  |  |||||||||| || ||||||||||||||||| |||| ||||||  |||||||||||    
T  9813912 cacttctacggtgcagttatgaaattgacttttttaaataagttattttgtttagctaataatataacagtttgatgccat 9813992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 14246548 - 14246507
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    |||||||||||||||||| ||||| |||||||||||| ||||    
T  14246548 tgacttttttgaaaaagtcattttatttagccaatagcataa 14246507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 21321129 - 21321063
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    |||||||||||||| || | | |||||||||||||||||||||||||||||||||||||||||||||    
T  21321129 cttctatggtgcagccagaaaactgacttttttgaaaaagttattttgtttagccaatagtataact 21321063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 22616869 - 22616803
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    ||||||||||||||||| | | |||| ||||||| ||||||||||||||||||||||||||||||||    
T  22616869 cttctatggtgcagtcagaaaactgatttttttggaaaagttattttgtttagccaatagtataact 22616803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 10237769 - 10237707
Alignment:
Q  300 ctgacttttttgaaaaagttattttgtttagccaatagtataactttgatgccatgttagcta 362  Q
    |||||||||||  ||||||||||||||||||||||||||||||| | |||| ||||| |||||    
T  10237769 ctgacttttttagaaaagttattttgtttagccaatagtataacgtcgatgtcatgtcagcta 10237707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 10053948 - 10053883
Alignment:
Q  301 tgacttttttgaaaaagttat-tttgtttagccaatagtataact-ttgatgccatgttagctagt 364  Q
    ||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||| |||||||    
T  10053948 tgacttttttgaaaaagttatgtttgtttacccaatagtataactgttgatgtcatgtcagctagt 10053883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 36055544 - 36055610
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    |||||| |||| ||||| | | || ||||||||| ||||||||||||||||||| ||||||||||||    
T  36055544 cttctaaggtgtagtcaaaaaactaacttttttggaaaagttattttgtttagctaatagtataact 36055610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 8762865 - 8762924
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatag 337  Q
    ||||||||||||||||| | |  |||||||||| ||||||| |||||||||| |||||||    
T  8762865 cttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatag 8762924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 12080426 - 12080455
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttag 330  Q
    ||||||||||||||||||||||||||||||    
T  12080426 tgacttttttgaaaaagttattttgtttag 12080455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 25654704 - 25654663
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    ||||||||||  ||||||||||||||||| ||||||||||||    
T  25654704 tgacttttttagaaaagttattttgtttaaccaatagtataa 25654663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 6178153 - 6178087
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    |||||| |||||||||| | | |||||||||||  ||||||||||||||||||||||||||||||||    
T  6178153 cttctacggtgcagtcaaaaaactgacttttttagaaaagttattttgtttagccaatagtataact 6178087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 17244777 - 17244837
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagt 338  Q
    ||||||| ||||||||| | | ||||||||||||||||| ||||||||||||| |||||||    
T  17244777 cttctatagtgcagtcagaaaactgacttttttgaaaaaattattttgtttagtcaatagt 17244837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 18514423 - 18514467
Alignment:
Q  300 ctgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||    
T  18514423 ctgaattttttgaaaaagttattttgtttagctaatagtataact 18514467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 59529 - 59467
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataact-ttgatgccatgttagcta 362  Q
    |||||||||||||||||||||||| |||||||||| | |||| | |||||||||||| |||||    
T  59529 tgacttttttgaaaaagttattttatttagccaattgcataattattgatgccatgtcagcta 59467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 41713513 - 41713476
Alignment:
Q  305 ttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    |||||||||||||||||||||||||| |||||||||||    
T  41713513 ttttttgaaaaagttattttgtttagtcaatagtataa 41713476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 344
Target Start/End: Original strand, 18779103 - 18779142
Alignment:
Q  305 ttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  18779103 ttttttggaaaagttattttgtttagtcaatagtataact 18779142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 39788279 - 39788345
Alignment:
Q  277 acttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    ||||||| |||||||||  | | |||| |||||||||||||| ||||||||||| |||||||||||||    
T  39788279 acttctacggtgcagtctgaaaactgatttttttgaaaaagt-attttgtttagtcaatagtataact 39788345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 41644252 - 41644165
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataact-ttgatgccatgttagctagt 364  Q
    |||||| |||||||| | | | || ||||||||||||||  |||||||||||||||||| ||||| | |||||| ||||| |||||||    
T  41644252 cttctacggtgcagtaaaaaaacttacttttttgaaaaatatattttgtttagccaataatataattgttgatgtcatgtcagctagt 41644165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 311 - 364
Target Start/End: Original strand, 18059064 - 18059118
Alignment:
Q  311 gaaaaagttattttgtttagccaatagtataact-ttgatgccatgttagctagt 364  Q
    |||||||||||||||||||| ||||||||||| | | |||| |||||||||||||    
T  18059064 gaaaaagttattttgtttagtcaatagtataattgtcgatgtcatgttagctagt 18059118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 19073708 - 19073667
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    ||||||||||| |||||||||||| ||||| |||||||||||    
T  19073708 tgacttttttgtaaaagttattttatttagtcaatagtataa 19073667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 22981845 - 22981882
Alignment:
Q  317 gttattttgtttagccaatagtataactttgatgccat 354  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  22981845 gttatttggtttaaccaatagtataactttgatgccat 22981882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 47555112 - 47555055
Alignment:
Q  300 ctgacttttttgaaaaagttattttgtttagccaatagtataact-ttgatgccatgt 356  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||    
T  47555112 ctgacttttttgaaaaagttattttgtttaaccaatagtataactgttgaggccatgt 47555055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 5500732 - 5500645
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataact-ttgatgccatgttagctagt 364  Q
    |||||| |||||||| | | | || ||||||||||||||||||||||||||||| |||||||||||| | |||| ||||| |||||||    
T  5500732 cttctacggtgcagttaaaaaactaacttttttgaaaaagttattttgtttagctaatagtataactatcgatgtcatgtcagctagt 5500645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 16135676 - 16135636
Alignment:
Q  304 cttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  16135676 cttttttgaaaaagttattttgtttagctaatagtataact 16135636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 10598266 - 10598200
Alignment:
Q  276 cacttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    |||||||| ||||||||||   | |||||||||||||||||||| ||||||||| ||||||| ||||    
T  10598266 cacttctacggtgcagtcaagaaactgacttttttgaaaaagttgttttgtttaaccaatagaataa 10598200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 28013056 - 28012995
Alignment:
Q  304 cttttttgaaaaagttattttgtttagccaatagtataact-ttgatgccatgttagctagt 364  Q
    |||||||||||||||||||||| ||||||||||| |||| | |||||| ||||| |||||||    
T  28013056 cttttttgaaaaagttattttggttagccaatagcataattgttgatgtcatgtcagctagt 28012995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 42663227 - 42663283
Alignment:
Q  273 gggcacttctatggtgcagtcatagatctgacttttttgaaaaagttattttgttta 329  Q
    ||||||||||||||||||||||   |  |||||||||||||||||||||||| ||||    
T  42663227 gggcacttctatggtgcagtcacgaaattgacttttttgaaaaagttattttattta 42663283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 43579625 - 43579561
Alignment:
Q  279 ttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataac 343  Q
    ||||||||||||||||   | ||||||||||  |||| |||||||||||||| ||||||||||||    
T  43579625 ttctatggtgcagtcagtaaactgactttttaaaaaatgttattttgtttagtcaatagtataac 43579561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 4146711 - 4146753
Alignment:
Q  300 ctgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    ||||||||||||||||||||||||||||||  |||||| ||||    
T  4146711 ctgacttttttgaaaaagttattttgtttaatcaatagaataa 4146753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 3120553 - 3120610
Alignment:
Q  300 ctgacttttttgaaaaagttattttgtttagccaatagtataact-ttgatgccatgt 356  Q
    ||||||||||| ||||| |||||||||||| |||||| ||||||| ||||||| ||||    
T  3120553 ctgacttttttaaaaaaattattttgtttaaccaataatataactgttgatgctatgt 3120610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 3859399 - 3859359
Alignment:
Q  303 acttttttgaaaaagttattttgtttagccaatagtataac 343  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3859399 acttttttgaaaaagttattttgtttagccaatagtataac 3859359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 28220703 - 28220766
Alignment:
Q  279 ttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    ||||| |||| ||||| | || |||| ||||||||||||||||||||||||| |||||||||||    
T  28220703 ttctaaggtgtagtcagaaatttgacatttttgaaaaagttattttgtttagtcaatagtataa 28220766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 6446175 - 6446245
Alignment:
Q  272 tgggcacttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    |||||||||||| ||||||||||   | ||||||||||| |||||||| |||| |||||||||||| ||||    
T  6446175 tgggcacttctacggtgcagtcaagaaactgacttttttaaaaaagttgttttttttagccaatagaataa 6446245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 4108607 - 4108648
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    |||||||||||||||||||||||||||||| ||||| |||||    
T  4108607 tgacttttttgaaaaagttattttgtttagtcaataatataa 4108648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Complemental strand, 7291073 - 7291032
Alignment:
Q  303 acttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  7291073 acttttttgaaaaaattattttgtttaggcaatagtataact 7291032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 18756339 - 18756400
Alignment:
Q  281 ctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    |||||||||||||| | |  ||| ||||| |||||||||||||||||||||||||| |||||    
T  18756339 ctatggtgcagtcagaaaattgattttttggaaaaagttattttgtttagccaataatataa 18756400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 23176479 - 23176520
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  23176479 tgacttttttgaaaaagttattttgtttattcaatagtataa 23176520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 30650927 - 30650968
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  30650927 tgacttttttgaaaaagttattttgtttagtcaattgtataa 30650968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 3038761 - 3038723
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagta 339  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  3038761 tgacttttttaaaaaaattattttgtttagccaatagta 3038723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 5299717 - 5299759
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagtta 320  Q
    ||||||||||||||||||  | |||||||||||||||||||||    
T  5299717 cttctatggtgcagtcatgaaactgacttttttgaaaaagtta 5299759  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 34686153 - 34686088
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    |||||| ||||||||||  || |||||||||||| |||||||||||| |||||  ||||||||||||    
T  34686153 cttctacggtgcagtcag-gaactgacttttttggaaaagttattttttttagttaatagtataact 34686088  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 43643366 - 43643408
Alignment:
Q  278 cttctatggtgcagtcatagatctgacttttttgaaaaagtta 320  Q
    ||||||||||||||||| | | |||||||||||||||||||||    
T  43643366 cttctatggtgcagtcagaaaactgacttttttgaaaaagtta 43643408  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 31706496 - 31706576
Alignment:
Q  285 ggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataa-ctttgatgccatgttagctagt 364  Q
    |||||||||| | | ||||||||||||||||||||||||||||||  |||||||||||  ||||||| ||||||| |||||    
T  31706496 ggtgcagtcaaaaaactgacttttttgaaaaagttattttgtttaatcaatagtataatttttgatgtcatgttaactagt 31706576  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 435387 - 435308
Alignment:
Q  275 gcacttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataact-ttgatgccatgt 356  Q
    ||||||||| |||||||||| |   || ||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||    
T  435387 gcacttctacggtgcagtcaaa---ctaacttttttggaaaagttattttgtttagccaataggatagctgttgatgccatgt 435308  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 7568417 - 7568461
Alignment:
Q  300 ctgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||    
T  7568417 ctgacatttttgaaaaagttattttgtttagtcaatagtataact 7568461  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 303 - 342
Target Start/End: Original strand, 7758129 - 7758168
Alignment:
Q  303 acttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  7758129 acttttttgaaaaagttattttgtttagtcaatagtataa 7758168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 301 - 344
Target Start/End: Original strand, 32180443 - 32180486
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  32180443 tgacttctttggaaaagttattttgtttagccaatagtataact 32180486  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 40640327 - 40640364
Alignment:
Q  305 ttttttgaaaaagttattttgtttagccaatagtataa 342  Q
    |||||||||||||||||||||||||| |||||||||||    
T  40640327 ttttttgaaaaagttattttgtttagtcaatagtataa 40640364  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 23165286 - 23165342
Alignment:
Q  273 gggcacttctatggtgcagtcatagatctgacttttttgaaaaagttattttgttta 329  Q
    ||||||||||| |||||||||||  |  |||||||||||||||||||||||| ||||    
T  23165286 gggcacttctacggtgcagtcatgaaattgacttttttgaaaaagttattttattta 23165342  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 11872864 - 11872801
Alignment:
Q  305 ttttttga-aaaagttattttgtttagccaatagtataactttgatgccatgttagctagtata 367  Q
    |||||||| ||||||||| || ||||  ||||||||||||||||||| |||||||| |||||||    
T  11872864 ttttttgagaaaagttatgttatttaatcaatagtataactttgatgtcatgttagttagtata 11872801  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 19606610 - 19606645
Alignment:
Q  305 ttttttgaaaaagttattttgtttagccaatagtat 340  Q
    |||||||||||||||||||||||||| |||||||||    
T  19606610 ttttttgaaaaagttattttgtttagtcaatagtat 19606645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 344
Target Start/End: Original strand, 38392320 - 38392363
Alignment:
Q  301 tgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    ||||||||||  |||||||||||||||||||||||| |||||||    
T  38392320 tgacttttttagaaaagttattttgtttagccaataatataact 38392363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 42205513 - 42205423
Alignment:
Q  276 cacttctatggtgcagtcatagatctgacttttttgaaaaagttattttgtttagccaatagtataac--tttgatgccatgttagctagt 364  Q
    |||||||| ||||||||||   | || | |||||| |||||||||||||||||||||| ||| |||||  || |||||||||| |||||||    
T  42205513 cacttctacggtgcagtcaggaaactaaatttttttaaaaagttattttgtttagccattaggataactgttagatgccatgtcagctagt 42205423  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 49359320 - 49359363
Alignment:
Q  301 tgacttttttgaaaa-agttattttgtttagccaatagtataac 343  Q
    ||||||||||||||| |||||||||||||||||| |||||||||    
T  49359320 tgacttttttgaaaaaagttattttgtttagccattagtataac 49359363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 66125 - 66074
Alignment:
Q  303 acttttttgaaaaagttattttgtttagccaatagtataact-ttgatgcca 353  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  66125 acttttttgaaaaaattattttgtttagccaatagtataactgttgatgcca 66074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 108062 - 108021
Alignment:
Q  321 ttttgtttagccaatagtataactttgatgccatgttagcta 362  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  108062 ttttgtttagccaataatataactttgatgccatgtcagcta 108021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 24509 - 24553
Alignment:
Q  300 ctgacttttttgaaaaagttattttgtttagccaatagtataact 344  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||    
T  24509 ctgacttttttagaaaagttattttgttaagccaatagtataact 24553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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