View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_high_8 (Length: 569)
Name: NF17184_high_8
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 52584029 - 52583650
Alignment:
| Q |
1 |
gaagttgtttcatgggagtagaacaggtgctagaacactctcctctgagctcaaagcagagttgaggattcatggacatttattggctgacaaacatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584029 |
gaagttgtttcatgggagtagaacaggtgctagaacactctcctctgagctcaaagcagagttgaggattcatggacatttattggctgacaaacatgaa |
52583930 |
T |
|
| Q |
101 |
catcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttct-----cttcctgattttatgttcactagtactaataaagaaaa |
195 |
Q |
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| T |
52583929 |
catcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttctcttctcttcctgattttatgttcactagtactaataaagaaaa |
52583830 |
T |
|
| Q |
196 |
ttgcatcatacttgagtagtattcg------------aattaagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatca |
283 |
Q |
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| T |
52583829 |
ttgcatcatacttgagtagtattcgaataaaaagcttaattaagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatca |
52583730 |
T |
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| Q |
284 |
aattgttttggtatgaactatataaatgttttcataagctatctttgagaatttatagacatggtataagctatttctat |
363 |
Q |
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| T |
52583729 |
aattgttttggtatgaactatataaatgttttcataagctatctttgagaatttatagacatggtataagctatttctat |
52583650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 370 - 553
Target Start/End: Complemental strand, 52583443 - 52583260
Alignment:
| Q |
370 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactaccatcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctg |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583443 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactaccatcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctg |
52583344 |
T |
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| Q |
470 |
caaagtgttacactgctctggcacttcaagcaatgtctaggcatttttgtagcttaagagatgccataatgtcccaaataaatg |
553 |
Q |
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| T |
52583343 |
caaagtgttacactgctctggcacttcaagcaatgtctaggcatttttgtagcttaagagatgccataatgtcccaaataaatg |
52583260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 19395216 - 19395153
Alignment:
| Q |
272 |
aaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatt |
336 |
Q |
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|||| |||||||||||||||| |||| | ||||| |||||||||||| ||||||||| ||||||| |
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| T |
19395216 |
aaacgaaaatcaaattgtttttgtataagctata-aaatgttttcattagctatcttggagaatt |
19395153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 38033892 - 38033934
Alignment:
| Q |
237 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
279 |
Q |
| |
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||||||||||||||||||||||||| |||||| || ||||||| |
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|
| T |
38033892 |
ttatcaaataagtgtttatgtataagttatttatataacaaaa |
38033934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 43133890 - 43133932
Alignment:
| Q |
237 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
279 |
Q |
| |
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|||||| |||||| |||||||||||||||||| |||||||||| |
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| T |
43133890 |
ttatcacataagtatttatgtataaattatttctaaaacaaaa |
43133932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 5939015 - 5939051
Alignment:
| Q |
244 |
ataagtgtttatgtataaattatttttaaaacaaaaa |
280 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||| |
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| T |
5939015 |
ataagtgtttatgtataagttatttttataacaaaaa |
5939051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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