View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_low_1 (Length: 870)
Name: NF17184_low_1
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 798; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 1 - 806
Target Start/End: Original strand, 4620417 - 4621222
Alignment:
| Q |
1 |
ctgtccactaaacccgatcgggttgtattttatttggaaggacctgctcctggaattgacttgcttataagatcagtagagatcaactgttccattccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4620417 |
ctgtccactaaacccgatcgggttgtattttatttggaaggacctgctcctggaattgacttgcttataagatcagtagagatcaactgttccattccaa |
4620516 |
T |
|
| Q |
101 |
atgacaatgtatatcatacatgaaattatgcatttcagatactgttatttctttatggaattctacatattggcaaagtttttattacttctttaattgt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4620517 |
atgacaatgtatatcatacatgaaattatgcatttcagatactgttatttctttatggaattctacatattggcaaaaattttattacttctttaattgt |
4620616 |
T |
|
| Q |
201 |
taaattgaacttgtattgagcctattattgtttcactctttaactttttgtgaaatctttatgttttaataacaccactaactggtgtaccttttcctcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4620617 |
taaattgaacttgtattgagcctattattgtttcactctttaactttttgtgaaatctttatgttttaataacaccactaactggtgtaccttttcctcg |
4620716 |
T |
|
| Q |
301 |
tatttcagaagttcataagtacagaagcatgtgtttctactggagatgaaagcatcataataaacccacaatttgaggatggcctgaataattggtctgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4620717 |
tatttcagaagttcataagtacagaagcatgtgtttctactggagatgaaagcatcataataaacccacaatttgaggatggcctgaataattggtctgg |
4620816 |
T |
|
| Q |
401 |
aaggagctgcaagattgtgttgcatgattccatggcagatggtaaaattgttccaaagtctgggaaatattttgcatgcgcaacagaacgaacacagttc |
500 |
Q |
| |
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| T |
4620817 |
aaggagctgcaagattgtgttgcatgattccatggcagatggtaaaattgttccaaagtctgggaaatattttgcatgcgcaacagaacgaacacagttc |
4620916 |
T |
|
| Q |
501 |
tggaatggaattcagcaggagataactggacgtgtgcagcgcaagttggcctatgagatcactgctttagttcgaatatatggcaacaatgtcactaatg |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4620917 |
tggaatggaattcagcaggagataactggacgtgtgcagcgcaagttggcctatgagatcactgctttagttcgaatatatggcaacaatgtcactaatg |
4621016 |
T |
|
| Q |
601 |
ccgatgtacgagctactttgtgggttcaaacaccagacctccgagagcagtatataggcattgcaaagttagtcttcacattatttttgctatagattta |
700 |
Q |
| |
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| T |
4621017 |
ccgatgtacgagctactttgtgggttcaaacaccagacctccgagagcagtatataggcattgcaaagttagtcttcacattatttttgctatagattta |
4621116 |
T |
|
| Q |
701 |
attcatatacatcgtcctagaaatattttttacactgttagtcaattgtatgattcagccatgaatttcagatagactcttgaggcatatgatttttctg |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4621117 |
attcatatacatcgtcctagaaatattttttacactgttagtcaattgtatgattcagccatgaatttcagatagactcttgaggcatatgatttttctg |
4621216 |
T |
|
| Q |
801 |
tttatt |
806 |
Q |
| |
|
|||||| |
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|
| T |
4621217 |
tttatt |
4621222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 790 - 863
Target Start/End: Original strand, 4621440 - 4621513
Alignment:
| Q |
790 |
tgatttttctgtttattattcttgaaactggataaaaataacaaaaggaaacttactgtagtataatatagcca |
863 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
4621440 |
tgatttttctgtttattattcttgaaactggataaaaataacaaaaggaaacttactgtagtatgatttagcca |
4621513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 329 - 673
Target Start/End: Complemental strand, 47887790 - 47887446
Alignment:
| Q |
329 |
atgtgtttctactggagatgaaagcatcataataaacccacaatttgaggatggcctgaataattggtctggaaggagctgcaagattgtgttgcatgat |
428 |
Q |
| |
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||||||||| |||| || |||| ||||||| |||| || | || ||||||||| ||||||||||| ||||||| |||||||||||| | ||||| |
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| T |
47887790 |
atgtgtttccactgacgacgaaaacatcatactaaatcctgagttcgaggatggcttgaataattggactggaagaggctgcaagattgcagtacatgaa |
47887691 |
T |
|
| Q |
429 |
tccatggcagatggtaaaattgttccaaagtctgggaaatattttgcatgcgcaacagaacgaacacagttctggaatggaattcagcaggagataactg |
528 |
Q |
| |
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||||||||| |||| ||||| |||| || || ||||||| ||||||| ||||| ||||| ||||| |||||||||||||||||| || || |||| |
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| T |
47887690 |
tccatggcaaatgggaaaatccttccgaaatccgggaaattctttgcatctgcaaccgaacgcacacaaagctggaatggaattcagcaagaaatcactg |
47887591 |
T |
|
| Q |
529 |
gacgtgtgcagcgcaagttggcctatgagatcactgctttagttcgaatatatggcaacaatgtcactaatgccgatgtacgagctactttgtgggttca |
628 |
Q |
| |
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|||| |||||||||||| | ||||||||| |||||||||||||||| |||| ||| ||||||||||||| | | |||||||| ||||| |||| ||||| |
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| T |
47887590 |
gacgagtgcagcgcaagcttgcctatgaggtcactgctttagttcggatatttgggaacaatgtcactacttctgatgtacgtgctacgttgtatgttca |
47887491 |
T |
|
| Q |
629 |
aacaccagacctccgagagcagtatataggcattgcaaagttagt |
673 |
Q |
| |
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|| |||||| || |||||||| |||||||||||||| |||||||| |
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| T |
47887490 |
aaaaccagatcttcgagagcaatatataggcattgccaagttagt |
47887446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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