View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17184_low_10 (Length: 539)

Name: NF17184_low_10
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17184_low_10
NF17184_low_10
[»] chr6 (7 HSPs)
chr6 (460-524)||(24977773-24977837)
chr6 (460-524)||(12770775-12770839)
chr6 (460-524)||(24976342-24976406)
chr6 (460-524)||(12766760-12766824)
chr6 (460-524)||(3894855-3894919)
chr6 (460-507)||(12777047-12777094)
chr6 (467-520)||(12800111-12800164)
[»] chr5 (1 HSPs)
chr5 (460-524)||(40235005-40235069)
[»] chr4 (2 HSPs)
chr4 (460-524)||(28745643-28745707)
chr4 (460-524)||(39936162-39936226)
[»] chr3 (7 HSPs)
chr3 (460-524)||(16724876-16724940)
chr3 (460-524)||(18177746-18177810)
chr3 (460-524)||(20204900-20204964)
chr3 (460-524)||(24835073-24835137)
chr3 (460-524)||(22261743-22261807)
chr3 (460-524)||(22266692-22266756)
chr3 (460-524)||(35269852-35269916)
[»] chr2 (3 HSPs)
chr2 (460-524)||(14106068-14106132)
chr2 (460-524)||(43822051-43822115)
chr2 (460-524)||(44909806-44909870)
[»] chr1 (4 HSPs)
chr1 (460-524)||(4449635-4449699)
chr1 (460-524)||(9826457-9826521)
chr1 (460-524)||(31279280-31279344)
chr1 (460-524)||(9812061-9812125)
[»] scaffold0432 (1 HSPs)
scaffold0432 (463-520)||(5827-5884)


Alignment Details
Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 24977837 - 24977773
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24977837 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 24977773  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 12770839 - 12770775
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  12770839 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggattgaaaccaggctctgata 12770775  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 24976406 - 24976342
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  24976406 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgata 24976342  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 12766824 - 12766760
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||    
T  12766824 tggcgcagcggaagcatggtgggcccataacccataggtccctggatcgaaaccaggctctgata 12766760  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 3894919 - 3894855
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| ||||||||    
T  3894919 tggcgcagcggaagcgtggtgggcccataacccacaggtccttggatagaaaccagactctgata 3894855  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 460 - 507
Target Start/End: Complemental strand, 12777094 - 12777047
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12777094 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatc 12777047  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 467 - 520
Target Start/End: Complemental strand, 12800164 - 12800111
Alignment:
Q  467 gcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctct 520  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  12800164 gcggaagcgtggtgggcccataacctacaggtccctggatcgaaaccaggctct 12800111  T

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Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 40235069 - 40235005
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40235069 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 40235005  T

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Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 28745707 - 28745643
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28745707 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 28745643  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Original strand, 39936162 - 39936226
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39936162 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 39936226  T

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Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 16724940 - 16724876
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16724940 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 16724876  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 18177810 - 18177746
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18177810 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 18177746  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Original strand, 20204900 - 20204964
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20204900 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 20204964  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 24835137 - 24835073
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24835137 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 24835073  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 460 - 524
Target Start/End: Original strand, 22261743 - 22261807
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  22261743 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgata 22261807  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 22266756 - 22266692
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  22266756 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgata 22266692  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 35269916 - 35269852
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35269916 tggcacagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 35269852  T

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Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 14106132 - 14106068
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14106132 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 14106068  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Original strand, 43822051 - 43822115
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43822051 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 43822115  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Original strand, 44909806 - 44909870
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44909806 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 44909870  T

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Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 4449699 - 4449635
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4449699 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 4449635  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 9826521 - 9826457
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9826521 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 9826457  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 31279344 - 31279280
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31279344 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 31279280  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 9812125 - 9812061
Alignment:
Q  460 tggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctctgata 524  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||    
T  9812125 tggcgcagcggaagcgtggtgggcccataacccataggtccctggattaaaaccaggctctgata 9812061  T

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Target: scaffold0432 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 5884 - 5827
Alignment:
Q  463 cgcagcggaagcgtggtgggcccataacccacaggtccctggatcggaaccaggctct 520  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||| ||| |||||||    
T  5884 cgcagcggaagcgtggtgggtccataacccataggttcctggatcgaaactaggctct 5827  T

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