View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17184_low_11 (Length: 460)
Name: NF17184_low_11
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 185 - 456
Target Start/End: Original strand, 7647093 - 7647364
Alignment:
| Q |
185 |
tcttcttatatatttatttattcattcaattcaaccttaaagacacgtttatgcttgtgttggagcaacccaaccattgccacgtacttgtctcgaaggg |
284 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7647093 |
tcttcttatctatttatttattcattcaattcaaccttgaagacacgtttatgcttgtgttggagcaacccaaccattgccacgtacttgtctcgaaggg |
7647192 |
T |
|
| Q |
285 |
atgagatcaaagtttagtgctggtggggtctctgctctatacaaccaattcagtctagtgcactccatctcttactttt-cccctctccaatatctcaaa |
383 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7647193 |
atgagatcaaagtttagtgctggt-gggtctctgatctatacaaccaattcagtctagtgcactccatctcttacttttccccctctccaatatctcaaa |
7647291 |
T |
|
| Q |
384 |
gttttgttgatacgtacccaaacatttgtgttctatacaatcctgtacggacacttataatttcttctctctc |
456 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7647292 |
gttttgttgatacggacccaaacatttgtgttctatacaatcctgtacggacacttataatttcttatctctc |
7647364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 7646844 - 7647009
Alignment:
| Q |
17 |
tatgtgactcgtgtccttctcataaaaccgtgcgtgtcacacatcaagcctattgaacataaaataataagtaattgaagaatgctaacaacattttctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7646844 |
tatgtgactcgtgtccttctcataaaaccgtgcgtgtcacacatcaagcctattgaacataaaataataagtaattgaagaatgctaacaacattctctt |
7646943 |
T |
|
| Q |
117 |
tttaatattgatg------------atgaaatttatatgtcttatactttaaaagtaagtcttgta |
170 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7646944 |
tttaatattggtgtactctaatcgaatgaaatttatatgtcttatattttaaaagtaagtcttgta |
7647009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University