View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17184_low_12 (Length: 442)

Name: NF17184_low_12
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17184_low_12
NF17184_low_12
[»] chr3 (6 HSPs)
chr3 (24-393)||(17501753-17502120)
chr3 (27-113)||(20611257-20611343)
chr3 (40-159)||(1653452-1653571)
chr3 (27-113)||(19175955-19176041)
chr3 (30-119)||(30935922-30936008)
chr3 (303-392)||(23336884-23336972)
[»] chr2 (4 HSPs)
chr2 (27-162)||(31902907-31903042)
chr2 (27-113)||(39339354-39339440)
chr2 (38-160)||(2062247-2062369)
chr2 (33-154)||(22886016-22886137)
[»] chr6 (3 HSPs)
chr6 (27-162)||(12793540-12793675)
chr6 (27-162)||(16510811-16510946)
chr6 (47-113)||(9223377-9223443)
[»] chr7 (5 HSPs)
chr7 (27-113)||(47326393-47326479)
chr7 (30-162)||(37792734-37792866)
chr7 (27-113)||(38305712-38305799)
chr7 (27-162)||(3420181-3420317)
chr7 (85-149)||(38484991-38485055)
[»] chr1 (5 HSPs)
chr1 (27-155)||(41919892-41920021)
chr1 (27-162)||(24685032-24685167)
chr1 (47-113)||(4651256-4651322)
chr1 (31-160)||(19597943-19598072)
chr1 (81-111)||(17032909-17032939)
[»] chr8 (5 HSPs)
chr8 (27-155)||(34389535-34389664)
chr8 (33-110)||(10551783-10551860)
chr8 (45-162)||(34866598-34866715)
chr8 (27-84)||(31210610-31210667)
chr8 (65-113)||(9519093-9519141)
[»] chr4 (2 HSPs)
chr4 (41-162)||(30963866-30963987)
chr4 (36-158)||(16501179-16501302)
[»] chr5 (2 HSPs)
chr5 (30-151)||(39184772-39184893)
chr5 (33-160)||(27712405-27712532)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 24 - 393
Target Start/End: Original strand, 17501753 - 17502120
Alignment:
Q  24 tgtatcactacgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatga 123  Q
    ||||||||||||| |||||||||||||||||| ||| || |||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||    
T  17501753 tgtatcactacgctgccaaacatcctcaccaaaaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatga 17501852  T
Q  124 cgtcagtttgaagctgaaacacaacctagatcgtaaaaaccagcgcagttgttctaatattgttttttattgtggagacgatgtagttgttcttgttgtt 223  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17501853 cgtcagtttgaagcggaaacacaacctagatcgtaaaaaccagcgcagttgttctaatattgttttttattgtggagacgatgtagttgttcttgttgtt 17501952  T
Q  224 atggatgtatacaggaatcaaacaagatgaacgaaagctcatagggtgtactaaacatgatgaacgtttcataggctaaaaccagcgctaacggtacaag 323  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  17501953 atggatgtatacaggaatcaaac--gatgaatgaaagctcatagggtgtactaaacatgatgaacgtttcataggctaaaaccagcgctaacaatacaag 17502050  T
Q  324 aaaacagttacaaagtctaatatcaaatttacaaaattaacctttaattaatattagttaaaaataatat 393  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17502051 aaaacagttacaaaatctaacatcaaatttacaaaattaacctttaattaatattagttaaaaataatat 17502120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 20611343 - 20611257
Alignment:
Q  27 atcactacgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaaca 113  Q
    ||||||| ||||||||||||||||||||||||||||  | ||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  20611343 atcactatgccgccaaacatcctcaccaagaaacaggcatcaacacaaatatagatctagatgaagaggaaatccaacaacaaaaca 20611257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 1653452 - 1653571
Alignment:
Q  40 caaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgtcagtttgaagctg 139  Q
    ||||| ||||||| |||||||||  ||||||||||||||| || | |||||||||||||||||||||||||||| || ||  |||| | |||||||||      
T  1653452 caaacctcctcacgaagaaacaggcagcaacacaaacataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagcga 1653551  T
Q  140 aaacacaacctagatcgtaa 159  Q
    ||| |||||| |||||||||    
T  1653552 aaagacaacccagatcgtaa 1653571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 19176041 - 19175955
Alignment:
Q  27 atcactacgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaaca 113  Q
    |||| ||||||||||||||||||||||||||||||   | || |||||||||| ||||| ||| |||| ||||||||||||||||||    
T  19176041 atcattacgccgccaaacatcctcaccaagaaacaagcaacagcacaaacataaatctaaagggagacaaaatccaacaacaaaaca 19175955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 30935922 - 30936008
Alignment:
Q  30 actacgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggaca 119  Q
    |||| |||||||||||  |||||||||||||||| | ||||| ||||||| ||||||||   ||||||| |||||||||||||| |||||    
T  30935922 actatgccgccaaacaatctcaccaagaaacagacaacaacaaaaacataaatctagag---gacgaaacccaacaacaaaacacggaca 30936008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 392
Target Start/End: Original strand, 23336884 - 23336972
Alignment:
Q  303 aaccagcgctaacggtacaagaaaacagttacaaagtctaatatcaaatttacaaaattaacctttaattaatattagttaaaaataata 392  Q
    ||||||||||||  ||||||||||| | ||| | |||  || ||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  23336884 aaccagcgctaatagtacaagaaaaaa-ttatagagttgaacatcaaatttacaaaattaacctttagttaatataagttcaaaataata 23336972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 31902907 - 31903042
Alignment:
Q  27 atcactacgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgt 126  Q
    ||||||||||||||||| | ||||| ||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||||||| || ||  ||||     
T  31902907 atcactacgccgccaaatagcctcagcaagaaacaaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgc 31903006  T
Q  127 cagtttgaagctgaaacacaacctagatcgtaaaaa 162  Q
    | ||||||||| ||||||||||||||||| ||||||    
T  31903007 cggtttgaagcggaaacacaacctagatcataaaaa 31903042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 39339354 - 39339440
Alignment:
Q  27 atcactacgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaaca 113  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  39339354 atcactacgccgccaaacatcctcaccaagaaacagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaaca 39339440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 2062369 - 2062247
Alignment:
Q  38 gccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgtcagtttgaagc 137  Q
    |||||||  |||||||||||||| | |||| ||||||||| ||||| |||| |||| | || |||||||||||||| || ||  |||| | || ||||||    
T  2062369 gccaaaccacctcaccaagaaactggaagctacacaaacacagatcaagagaaagatgcaacccaacaacaaaacacgggcagcgacgccggtctgaagc 2062270  T
Q  138 tgaaacacaacctagatcgtaaa 160  Q
     ||||||||||| ||||||||||    
T  2062269 ggaaacacaacccagatcgtaaa 2062247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 22886016 - 22886137
Alignment:
Q  33 acgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgtcagttt 132  Q
    ||||||||||||  |||||||||||||||   |||||||||   | | ||| ||||||||| |||| |||||||||||||| ||| |  |||| |||| |    
T  22886016 acgccgccaaaccacctcaccaagaaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcgacgccagtct 22886115  T
Q  133 gaagctgaaacacaacctagat 154  Q
    ||||| |||||| |||| ||||    
T  22886116 gaagcggaaacaaaacccagat 22886137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 12793675 - 12793540
Alignment:
Q  27 atcactacgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgt 126  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||||||||  |||||| |||||||||||||||||| || ||||||| || ||| ||||     
T  12793675 atcactatgccgccaaacaccctcaccaagaaacagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgc 12793576  T
Q  127 cagtttgaagctgaaacacaacctagatcgtaaaaa 162  Q
    |||||||||||  |||||||||| | ||||||||||    
T  12793575 cagtttgaagcgaaaacacaacccatatcgtaaaaa 12793540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 16510811 - 16510946
Alignment:
Q  27 atcactacgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgt 126  Q
    |||||||||||||||| ||||||||||||||||||   | ||||||||||||| |||||||||||||||| |||||||||||||||| || ||  || |     
T  16510811 atcactacgccgccaaccatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgacatccaacaacaaaacacgggcagcgatgc 16510910  T
Q  127 cagtttgaagctgaaacacaacctagatcgtaaaaa 162  Q
    | ||||||||| ||| ||||||| | ||| ||||||    
T  16510911 cggtttgaagcagaaccacaacccatatcataaaaa 16510946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 9223443 - 9223377
Alignment:
Q  47 cctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaaca 113  Q
    |||||||||||||||| | |||||||||||| | ||  |||||||||||||||||||||||||||||    
T  9223443 cctcaccaagaaacaggaggcaacacaaacacaaattcagaggaagacgaaatccaacaacaaaaca 9223377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 47326393 - 47326479
Alignment:
Q  27 atcactacgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaaca 113  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||| || |||||||||||||| |||||||||||||||||||    
T  47326393 atcactacgccgccaaacatcctcaccaagaaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaaca 47326479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 37792866 - 37792734
Alignment:
Q  30 actacgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgtcag 129  Q
    |||||||||||||||   |  ||||||||||||| |||||||||||||  |||| |||| |||| |||| |||||| ||||||| |||||| |||| | |    
T  37792866 actacgccgccaaaccagccaaccaagaaacagacagcaacacaaacacggatcaagagaaagatgaaacccaacagcaaaacacggacaacgacgccgg 37792767  T
Q  130 tttgaagctgaaacacaacctagatcgtaaaaa 162  Q
    |||||||| ||||||||||| | ||||||||||    
T  37792766 tttgaagcggaaacacaacccatatcgtaaaaa 37792734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 38305799 - 38305712
Alignment:
Q  27 atcactacgccgccaaa-catcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaaca 113  Q
    ||||||||||| ||||| ||||||||||||||||||   | ||||||||||||  |||||||||||||||||||||||||||||||||    
T  38305799 atcactacgccaccaaaacatcctcaccaagaaacaagcaacaacacaaacatcaatctagaggaagacgaaatccaacaacaaaaca 38305712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 3420181 - 3420317
Alignment:
Q  27 atcactacgccgccaaa-catcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacg 125  Q
    ||||||||| ||||||| ||||||||||||||||||   | |||||||  |||| || ||||||||||||||| | |||||||||||| |  ||  ||||    
T  3420181 atcactacgtcgccaaaacatcctcaccaagaaacaagcaacaacacatgcataaatttagaggaagacgaaaccaaacaacaaaacacgagcagcgacg 3420280  T
Q  126 tcagtttgaagctgaaacacaacctagatcgtaaaaa 162  Q
     | ||| ||||| ||| ||||||||||||| ||||||    
T  3420281 ccggttcgaagcggaaccacaacctagatcataaaaa 3420317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 38485055 - 38484991
Alignment:
Q  85 agaggaagacgaaatccaacaacaaaacatggacaatgacgtcagtttgaagctgaaacacaacc 149  Q
    |||||||||||||| |  |||||||||||||| ||  |||| | ||||||||| |||||||||||    
T  38485055 agaggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 41920021 - 41919892
Alignment:
Q  27 atcactacgccgccaaa-catcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacg 125  Q
    ||||||||||||||||| ||||||||||||||||||   | ||||||||||||| ||||||||||||| ||||||| ||||||||||| || ||| ||||    
T  41920021 atcactacgccgccaaaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagatgaaatcccacaacaaaacacgggcaacgacg 41919922  T
Q  126 tcagtttgaagctgaaacacaacctagatc 155  Q
       ||||||||| ||| ||||||| |||||    
T  41919921 ctggtttgaagcggaaccacaacccagatc 41919892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 24685032 - 24685167
Alignment:
Q  27 atcactacgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgt 126  Q
    |||||||||||||||||||||||||||||||||||   | ||||||||||||| ||||| ||  |||| |||| ||||||||||||| || ||  ||||     
T  24685032 atcactacgccgccaaacatcctcaccaagaaacaagcaacaacacaaacataaatctaaagagagacaaaattcaacaacaaaacacgggcagcgacgc 24685131  T
Q  127 cagtttgaagctgaaacacaacctagatcgtaaaaa 162  Q
    | ||||||||| ||| ||||||| | ||| ||||||    
T  24685132 cggtttgaagcagaaccacaacccatatcataaaaa 24685167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 4651322 - 4651256
Alignment:
Q  47 cctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaaca 113  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||||||||| | ||||||||||||    
T  4651322 cctcaccaagaaacagacagcaacacaaacatagatcatgaggaagacgaaacctaacaacaaaaca 4651256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 19598072 - 19597943
Alignment:
Q  31 ctacgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgtcagt 130  Q
    ||||||| ||||||  |||| |||||||||||  |||||| |||||| | | | | ||||||| |||| ||||||||| |||| || ||| |||| | ||    
T  19598072 ctacgcctccaaaccacctcgccaagaaacaggcagcaacccaaacacaaaccaaaaggaagatgaaacccaacaacagaacacgggcaacgacgccggt 19597973  T
Q  131 ttgaagctgaaacacaacctagatcgtaaa 160  Q
     |||||  ||||||||||||||||||||||    
T  19597972 ctgaagtggaaacacaacctagatcgtaaa 19597943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 111
Target Start/End: Complemental strand, 17032939 - 17032909
Alignment:
Q  81 atctagaggaagacgaaatccaacaacaaaa 111  Q
    |||||||||||||||||||||||||||||||    
T  17032939 atctagaggaagacgaaatccaacaacaaaa 17032909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 34389535 - 34389664
Alignment:
Q  27 atcactacgccgccaaa-catcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacg 125  Q
    ||||||||||||||||| ||||||||||||||||||   | ||||||||||||| |||||||||| |||||||| | ||||||||||| || ||  ||||    
T  34389535 atcactacgccgccaaaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaggacgaaattccacaacaaaacacgggcagcgacg 34389634  T
Q  126 tcagtttgaagctgaaacacaacctagatc 155  Q
     | ||||||||| ||| ||||||| |||||    
T  34389635 ccggtttgaagcggaagcacaacccagatc 34389664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 10551860 - 10551783
Alignment:
Q  33 acgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaa 110  Q
    |||||| ||||||  ||| |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  10551860 acgccgacaaacagtctctccaagaaatagacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaa 10551783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 162
Target Start/End: Original strand, 34866598 - 34866715
Alignment:
Q  45 atcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgtcagtttgaagctgaaaca 144  Q
    |||||||||||||||||   | ||||||||||||| || |||||||||||||||||||||||||||||| || ||  |||| | ||||||||| ||| ||    
T  34866598 atcctcaccaagaaacaagcaacaacacaaacataaatttagaggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaacca 34866697  T
Q  145 caacctagatcgtaaaaa 162  Q
    ||||| || || ||||||    
T  34866698 caacccaggtcataaaaa 34866715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 31210610 - 31210667
Alignment:
Q  27 atcactacgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatct 84  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||||||| | ||||||    
T  31210610 atcactacgccgccaaacatcgtcaccaagaaacaggcagcaacacaaatacagatct 31210667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 9519141 - 9519093
Alignment:
Q  65 agcaacacaaacatagatctagaggaagacgaaatccaacaacaaaaca 113  Q
    ||||| ||||||| | |||||||| ||||||||| ||||||||||||||    
T  9519141 agcaatacaaacacaaatctagagaaagacgaaacccaacaacaaaaca 9519093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 30963987 - 30963866
Alignment:
Q  41 aaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgtcagtttgaagctga 140  Q
    |||||||||||||||||||||   | ||||||||||||| |||||||||||||||||||||||| |||||||| || ||  |||| | ||||||||  ||    
T  30963987 aaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtgga 30963888  T
Q  141 aacacaacctagatcgtaaaaa 162  Q
    | ||||||| ||||| ||||||    
T  30963887 accacaacccagatcataaaaa 30963866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 16501302 - 16501179
Alignment:
Q  36 ccgccaaacatcctcaccaagaaa-cagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgtcagtttga 134  Q
    |||||||||  ||||||||||||| ||||  || ||||||||| | || ||||||||||| ||| ||||||||| ||||||| ||  |||| | ||||||    
T  16501302 ccgccaaaccgcctcaccaagaaaacagacggccacacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttga 16501203  T
Q  135 agctgaaacacaacctagatcgta 158  Q
    ||  ||| ||||||| | ||||||    
T  16501202 agtggaatcacaacccaaatcgta 16501179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 39184772 - 39184893
Alignment:
Q  30 actacgccgccaaacatcctcaccaagaaa-cagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgtca 128  Q
    |||||||||||||||  ||||||||||||| |||| ||||||||||| | | || || ||||||||||||  |||| ||||||||| | ||| |||| ||    
T  39184772 actacgccgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatatataggaagacgaaacacaactacaaaacataggcaacgacgcca 39184870  T
Q  129 gtttgaagctgaaacacaaccta 151  Q
    ||||||||| ||| |||||||||    
T  39184871 gtttgaagcagaatcacaaccta 39184893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 27712532 - 27712405
Alignment:
Q  33 acgccgccaaacatcctcaccaagaaacagaaagcaacacaaacatagatctagaggaagacgaaatccaacaacaaaacatggacaatgacgtcagttt 132  Q
    ||||| ||||||  |||| |||||||||||| | |||| |||||| ||| | | ||||||| |||| |||||||||||||| || ||| |||| | || |    
T  27712532 acgcctccaaaccacctcgccaagaaacagacaacaacccaaacacagaccaaaaggaagatgaaacccaacaacaaaacacgggcaacgacgccggtct 27712433  T
Q  133 gaagctgaaacacaacctagatcgtaaa 160  Q
    ||||  ||||||||| ||||||||||||    
T  27712432 gaagtagaaacacaatctagatcgtaaa 27712405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University