View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17184_low_13 (Length: 434)

Name: NF17184_low_13
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17184_low_13
NF17184_low_13
[»] scaffold0170 (1 HSPs)
scaffold0170 (1-421)||(7951-8392)
[»] chr8 (3 HSPs)
chr8 (20-414)||(25130628-25131042)
chr8 (2-118)||(9670680-9670792)
chr8 (43-118)||(39531507-39531586)
[»] chr1 (9 HSPs)
chr1 (153-414)||(13569395-13569656)
chr1 (110-366)||(18542373-18542630)
chr1 (16-283)||(10801921-10802206)
chr1 (16-118)||(13569678-13569780)
chr1 (274-414)||(10800793-10800925)
chr1 (1-107)||(44586413-44586515)
chr1 (60-145)||(41752151-41752243)
chr1 (79-118)||(18542643-18542682)
chr1 (110-167)||(44586332-44586389)
[»] chr4 (3 HSPs)
chr4 (130-414)||(43301138-43301411)
chr4 (110-164)||(43301685-43301739)
chr4 (66-118)||(43301752-43301804)
[»] scaffold0001 (2 HSPs)
scaffold0001 (16-301)||(141634-141941)
scaffold0001 (296-414)||(142251-142368)
[»] chr6 (3 HSPs)
chr6 (292-414)||(24500633-24500754)
chr6 (110-164)||(20623869-20623923)
chr6 (66-118)||(20623804-20623856)
[»] chr3 (3 HSPs)
chr3 (54-118)||(43585446-43585510)
chr3 (43-118)||(31986142-31986217)
chr3 (54-111)||(53707490-53707547)
[»] chr5 (1 HSPs)
chr5 (58-115)||(22541394-22541451)


Alignment Details
Target: scaffold0170 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 7951 - 8392
Alignment:
Q  1 tttctttgttattttttctattttgttgctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataatt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7951 tttctttgttattttttctattttgttgctgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataatt 8050  T
Q  101 gttgattatcc---------------------ctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgatt 179  Q
    |||||||||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8051 gttgattatccctaattttgatttctcaatccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgatt 8150  T
Q  180 ctatgttgtataagttgatcaagtccaatgtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaa 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||    
T  8151 ctatgttgtataagttgatcaagtccaatgtaataacttgaataatgagaaggtaaggatttcttaggattattacttcaagaggctcaaattttcctaa 8250  T
Q  280 atagcttaaaacaagttaaatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttataaccact 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  8251 atagcttaaaacaagttaaatactttcatggatgtgtgaataaattagaaactttgctcattgtttgatatatcaatatagcataattgttataaccact 8350  T
Q  380 ttgtagtatttttgggcgcctgttggtgtgtttgtttggcct 421  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8351 ttgtagtatttttgggcgcctgttggtgtgtttgtttggcct 8392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 20 - 414
Target Start/End: Complemental strand, 25131042 - 25130628
Alignment:
Q  20 attttgttgctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt- 118  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  25131042 attttgttcctgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattcaaaactgcaatttataattgttgattatccctaatttt 25130943  T
Q  119 --------------------agaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataagttga 197  Q
                        ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25130942 gattttccaaatcctaatttagaattgttaattattctctttgtttgtccaaagagaattgttaatttcagaattttgattctactgttgtataagttga 25130843  T
Q  198 tcaagtccaatgtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaagtta 297  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  25130842 tcaagtccaatgtaataacttgaataacgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagtctaaaacaagtta 25130743  T
Q  298 aatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttttgggcg 397  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |    
T  25130742 aatactttcatgaatgtgtgaataaattagaaactttgctgattgtttgatatagcaatatagcataattgttataaccactatgtagtatttttgg--g 25130645  T
Q  398 cctgttggtgtgtttgt 414  Q
    |||||||||||||||||    
T  25130644 cctgttggtgtgtttgt 25130628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 9670792 - 9670680
Alignment:
Q  2 ttctttgttattttttctattttgttgctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattg 101  Q
    |||| |||||||| ||||||||| ||  |||  |||| |  ||||||||||||||||    |||||||||||| ||||||||||| |||||||| |||||    
T  9670792 ttctatgttatttgttctattttattaatgatggttgttatttgttaatgggtgaat----gagttgattattcaaattccaaaccgcaatttagaattg 9670697  T
Q  102 ttgattatccctaattt 118  Q
    ||||| |||||||||||    
T  9670696 ttgataatccctaattt 9670680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 39531507 - 39531586
Alignment:
Q  43 ttgttaatgggtgaatcaa-----tgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 118  Q
    |||||||||||||||||||     ||||||||||||| |||||| ||||| |||||||  |||||||||||| || |||||    
T  39531507 ttgttaatgggtgaatcaaggagttgagttgattattcaaattcaaaactacaattta-gattgttgattattcccaattt 39531586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 153 - 414
Target Start/End: Complemental strand, 13569656 - 13569395
Alignment:
Q  153 agaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtccaatgtaataacttgaataatgagaatgtaaggatttcttaggatta 251  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  13569656 agaattgttaatttcagaattttgattctactgttgtataagttgatcaagtccaatgtaataacttggataacgagaatgtaaggatttcttaggatta 13569557  T
Q  252 ttacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatata 351  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13569556 ttacttcaagaggctcaaattttggtaaatagtctaaaacaagttaaatactttcatgaatgtgtgaataaattagaaactttgctgattgtttgatata 13569457  T
Q  352 gcaatatagcataattgttataaccactttgtagtatttttgggcgcctgttggtgtgtttgt 414  Q
    ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||    
T  13569456 gcaatatagcataattgttataaccactttgtagtattttttgg-gcatgttggtgtgtttgt 13569395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 110 - 366
Target Start/End: Complemental strand, 18542630 - 18542373
Alignment:
Q  110 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtccaat 208  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  18542630 ccctaatttagaattgttgattcttctctttgtttatccaaagagaattgttaatttcagaattttgattctaatgctgtataagttgatcaagtccaat 18542531  T
Q  209 gtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaatactttcat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||    
T  18542530 gtaataacttgaataatgagaatgtaaggatttcttaggattattacttcagaaggctcaaattttggtaaatagtctaaaacaagttaaatactttcat 18542431  T
Q  309 ggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataat 366  Q
    | |||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  18542430 gaatgtgtgaataaattagaaactttgttgattgtttgatataacaatatagcataat 18542373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 10802206 - 10801921
Alignment:
Q  16 ttctattttgttgctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaa 115  Q
    |||||||||||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  10802206 ttctattttgttcctgaatgttgatgcttgttaaggagtgaatcaatgagttgattatttaaattcaaaactgcaatttataattattgattatccctaa 10802107  T
Q  116 ttt---------------------agaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataag 193  Q
    |||                     ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10802106 ttttgatttcccaaaccctaatttagaattgttaattcttctctttctttgtccaaagagaattgttaatttcagaattttgattctactgttgtataag 10802007  T
Q  194 ttgatcaagtccaatgtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatag 283  Q
    ||||||||||||||||||||||||||||    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10802006 ttgatcaagtccaatgtaataacttgaa----gagaatgtaaggatttcttaggatttttacttcaagaggctcaaattttggtaaatag 10801921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 13569780 - 13569678
Alignment:
Q  16 ttctattttgttgctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaa 115  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13569780 ttctattttgttcttgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattcaaaactgcaatttataattgttgattatccctaa 13569681  T
Q  116 ttt 118  Q
    |||    
T  13569680 ttt 13569678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 274 - 414
Target Start/End: Complemental strand, 10800925 - 10800793
Alignment:
Q  274 tggtaaatagcttaaaacaagttaaatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttata 373  Q
    ||||||||||  |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||        |||||||||||||||    
T  10800925 tggtaaatagtctaaaacaagttaaatactttcatgaatgtgtgaataaattagaaacgttgctgattgtttgatat--------agcataattgttata 10800834  T
Q  374 accactttgtagtatttttgggcgcctgttggtgtgtttgt 414  Q
    |||| ||||||||||||||  | ||||||||||||||||||    
T  10800833 accaatttgtagtatttttttgggcctgttggtgtgtttgt 10800793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 44586515 - 44586413
Alignment:
Q  1 tttctttgttattttttctattttgttgctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataatt 100  Q
    |||||||||||||| ||||||||||||| |||   ||| |  ||||||||||||||||    |||||||||||| ||||||||||| |||||||| ||||    
T  44586515 tttctttgttatttgttctattttgttgttgatgcttgttatttgttaatgggtgaat----gagttgattattcaaattccaaaccgcaatttagaatt 44586420  T
Q  101 gttgatt 107  Q
    |||||||    
T  44586419 gttgatt 44586413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 41752151 - 41752243
Alignment:
Q  60 aatgagttgattatttaaattccaaactgcaatttataattgttgattat-------ccctaatttagaattgttgattcttctctttgtttg 145  Q
    ||||||||||||||| |||||| |||| |||||||| ||||||| |||||       |||||||| | |||||||||||||||||||||||||    
T  41752151 aatgagttgattattcaaattctaaaccgcaatttagaattgttaattatccccaaaccctaattcataattgttgattcttctctttgtttg 41752243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 18542682 - 18542643
Alignment:
Q  79 ttccaaactgcaatttataattgttgattatccctaattt 118  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  18542682 ttccaaagtgcaatttataattgttgattatccctaattt 18542643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 44586389 - 44586332
Alignment:
Q  110 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttc 167  Q
    |||||||| |||||||| |||||||||| ||||||||||| ||||||| ||| |||||    
T  44586389 ccctaattcagaattgtcgattcttctccttgtttgtccagagagaatcgttgatttc 44586332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 130 - 414
Target Start/End: Complemental strand, 43301411 - 43301138
Alignment:
Q  130 ttcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtccaatgtaataacttgaataatgag 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        
T  43301411 ttcttctctttgtttgtccaaagagaattgttaatttcagaattttgattctactgttgtataagttgatcaagtccaatgtaataacttgaataa---- 43301316  T
Q  229 aatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaatactttcatggatgtgtgaataaattaaa 328  Q
           |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||| |||||||||||||||| |    
T  43301315 -------ggatttcttaggattattacttcaagaggctcaaattttggtaaatggtctaaaacaagttaaatactttcatgaatgtgtgaataaattaga 43301223  T
Q  329 aactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttttgggcgcctgttggtgtgtttgt 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  43301222 aactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtattttttgg-gcctgttggtgtgtttgt 43301138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 43301739 - 43301685
Alignment:
Q  110 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaat 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43301739 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaat 43301685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 43301804 - 43301752
Alignment:
Q  66 ttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 118  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  43301804 ttgattatttaaatacaaaactgcaatttataattgttgattatccctaattt 43301752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 141634 - 141941
Alignment:
Q  16 ttctattttgttgctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatcc---- 111  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||         
T  141634 ttctattttgttcctgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattcaaaactgcaatttataattgttgattatctttaa 141733  T
Q  112 -----------------ctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataag 193  Q
                     ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||    
T  141734 ttttgatttcccaaactctaatttagaattgttgattcttctctttgtttgtccaaagagaatttttaatttcagaattttgattctactattgcataag 141833  T
Q  194 ttgatcaagtccaatgtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaa 293  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  141834 ttgatcaactccaatgtaataacttgaataacgagaatataaggatttcttaggattattacttcaagaggctcaaattttggtaaatagtttaaaacaa 141933  T
Q  294 gttaaata 301  Q
    ||||||||    
T  141934 gttaaata 141941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 296 - 414
Target Start/End: Original strand, 142251 - 142368
Alignment:
Q  296 taaatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttttggg 395  Q
    |||||| ||||||| | |||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||    
T  142251 taaatattttcatgaacgtgtgaataaattagaaactttgctgattgtttaatattgcattatagcataattgttataaccactttgtagtattttttgg 142350  T
Q  396 cgcctgttggtgtgtttgt 414  Q
     ||||||||||||||||||    
T  142351 -gcctgttggtgtgtttgt 142368  T

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Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 292 - 414
Target Start/End: Complemental strand, 24500754 - 24500633
Alignment:
Q  292 aagttaaatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttt 391  Q
    |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24500754 aagttaaatactttcatgaatgtgtcaataaattagaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttt 24500655  T
Q  392 tgggcgcctgttggtgtgtttgt 414  Q
    | || ||||||||||||||||||    
T  24500654 ttgg-gcctgttggtgtgtttgt 24500633  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 20623869 - 20623923
Alignment:
Q  110 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaat 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20623869 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaat 20623923  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 20623804 - 20623856
Alignment:
Q  66 ttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 118  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  20623804 ttgattatttaaatacaaaactgcaatttataattgttgattatccctaattt 20623856  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 43585446 - 43585510
Alignment:
Q  54 tgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 118  Q
    ||||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||    
T  43585446 tgaatcaatgagttgattattcaaattccaaaccacaatttagaattgttgattatccctaattt 43585510  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 31986142 - 31986217
Alignment:
Q  43 ttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 118  Q
    |||||||||| ||||||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||| |||||    
T  31986142 ttgttaatggatgaatcaatgagttgattattcaaatttcaaaccacaatttagaattgttgattatccccaattt 31986217  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 53707490 - 53707547
Alignment:
Q  54 tgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatcc 111  Q
    ||||||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||    
T  53707490 tgaatcaatgagttgattattcaaatttcaaaccacaatttagaattgttgattatcc 53707547  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 22541394 - 22541451
Alignment:
Q  58 tcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaa 115  Q
    ||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||||    
T  22541394 tcaatgagttgattattcaaattccaaaccacaatttagaattgttgattatccctaa 22541451  T

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