View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_low_14 (Length: 421)
Name: NF17184_low_14
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 3 - 421
Target Start/End: Original strand, 25940170 - 25940586
Alignment:
| Q |
3 |
ggtagattatactagtatgtttaggattactatcaactatcctaaattgtgtttcttcaaca--agtatgaatgaatgtgataagaagtgtgttaaaatt |
100 |
Q |
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| T |
25940170 |
ggtatattatactagtatgtttaggattactatcaactatcctaaattgcgtttcttcaacataagtatgaatgaatgtggtaagaagtgtgttaaaatt |
25940269 |
T |
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| Q |
101 |
tgaaagactttcttaccaacattattcttatatttaatagaaatgttatttaaattaattcgagttttaaaccattgacgaacaaaattataatttgtgt |
200 |
Q |
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| T |
25940270 |
tgaaagactttcttaccaacattattcttatatttaatagaaatgttatttaaattaattcgagttttaaaccattgacgaacaaatttataatttgtgt |
25940369 |
T |
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| Q |
201 |
tgtggcagtgggcaaacagcctttgccagggagccagtctaccactttccacgcctctcaaggtacacatatataatatatgttcccgttccttgttatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25940370 |
tgtggcagtgggcaaacagcctttgccagggagccagtctaccactttccacgcctctcaaggtacacatatataatatatgttcccgttccttgttatt |
25940469 |
T |
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| Q |
301 |
gcatttcatttttatatgttcctattagtttaacttgaaattttgacattttcatcataattacttctagctttatttaaggtgttgatactcttagctt |
400 |
Q |
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|||||||||||| |||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25940470 |
gcatttcatttt--tatgttcctattggtttaact--aaattttgacattttcatcacaattacttctagctttatttaaggtgttgatactcttagctt |
25940565 |
T |
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| Q |
401 |
cctatggtagccatttgattt |
421 |
Q |
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||||||| ||||||||||||| |
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| T |
25940566 |
cctatggcagccatttgattt |
25940586 |
T |
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