View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_low_16 (Length: 367)
Name: NF17184_low_16
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 43062240 - 43062563
Alignment:
| Q |
18 |
aaaagatcataggagtcatgcaaccttccatattgctttgatatgttgatctgttttttcataaaatctagttccgatttccaatgttttttgtcactga |
117 |
Q |
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| T |
43062240 |
aaaagatcataggagtcatgcaaccttccatattgctttgatatgttgatctgttttttcataaaatctagttccgatttccaatgttttttgtcactga |
43062339 |
T |
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| Q |
118 |
ttcgtattactgacctctgtattgcataatgttgtcttaacttctttacgttacaatctgctatttggtttctgtattcgggcataggttaataactatc |
217 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43062340 |
ttcgtattattgacctctgtattgcataatgttgtcttaacttctttacgttacaatctgctatttggtttctgtattcgggcataggttattaactatc |
43062439 |
T |
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| Q |
218 |
aaaattatgctaggaaaaagaccatttatccaaaagagtctgagccgaagttatgtaaccgttatgaaatatgacatcagttatagtagttaatgcgtta |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43062440 |
aaaattttgctaggaaaaagaccatttatccaaaagagtctgagccgaagttatgtaaccgttatgaaatatgacatcagttatagtagttaatgcgtta |
43062539 |
T |
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| Q |
318 |
ttatagtccttcctaacactaccc |
341 |
Q |
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|||||||||||||||||||||||| |
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| T |
43062540 |
ttatagtccttcctaacactaccc |
43062563 |
T |
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