View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17184_low_17 (Length: 367)

Name: NF17184_low_17
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17184_low_17
NF17184_low_17
[»] chr8 (2 HSPs)
chr8 (117-352)||(3514181-3514416)
chr8 (1-77)||(3514449-3514525)
[»] chr2 (1 HSPs)
chr2 (163-208)||(34597003-34597048)
[»] chr3 (2 HSPs)
chr3 (175-231)||(13994986-13995042)
chr3 (157-216)||(30992293-30992352)
[»] chr7 (1 HSPs)
chr7 (174-205)||(25017555-25017586)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 117 - 352
Target Start/End: Complemental strand, 3514416 - 3514181
Alignment:
Q  117 ctaatctctatgatatatctctcatcgcgcatcaggcagcagttgtggaagcaagtcctctggtggctccaaaaactcacgccaaatctcagtatttgta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3514416 ctaatctctatgatatatctctcatcgcgcatcaggcagcagttgcggaagcaagtcctctggtggctccaaaaactcatgccaaatctcagtatttgta 3514317  T
Q  217 actcttaatttagccgaattcgcctccctcatataatgctttaactgaacgtgacaactcatttgcaataaatcctgccaatgctgcataatgatgccaa 316  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | |    
T  3514316 actcttaatttagccgaattcgcctccctcatgtaatgctttaactggacgtgacaactcatttgcaataaatcctgccaatgccgcataatgatgtcta 3514217  T
Q  317 caatagttgagtcaaactaggagttgacatccatat 352  Q
    ||||||||||||||||||||||||| ||||| ||||    
T  3514216 caatagttgagtcaaactaggagttcacatctatat 3514181  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 3514525 - 3514449
Alignment:
Q  1 agatacatatataaaagaaaagatatgataattttcaaatatccgtgttaagacaatgtataagccaataatgacaa 77  Q
    |||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3514525 agatgcatatataaaagaaaagacacgataattttcaaatatccgtgttaagacaatgtataagccaataatgacaa 3514449  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 34597048 - 34597003
Alignment:
Q  163 ggaagcaagtcctctggtggctccaaaaactcacgccaaatctcag 208  Q
    ||||||||  ||||||||||||||||||||||||||||||| ||||    
T  34597048 ggaagcaaaccctctggtggctccaaaaactcacgccaaatatcag 34597003  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 13994986 - 13995042
Alignment:
Q  175 tctggtggctccaaaaactcacgccaaatctcagtatttgtaactcttaatttagcc 231  Q
    ||||||||||||||||||||||||||||| |||| | ||| | ||| ||||||||||    
T  13994986 tctggtggctccaaaaactcacgccaaatatcagaacttgcagctcctaatttagcc 13995042  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 30992293 - 30992352
Alignment:
Q  157 agttgtggaagcaagtcctctggtggctccaaaaactcacgccaaatctcagtatttgta 216  Q
    ||||| ||||||||| ||| |||||||| || ||| |||||||||||||||||| |||||    
T  30992293 agttgaggaagcaagccctttggtggcttcagaaattcacgccaaatctcagtacttgta 30992352  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 205
Target Start/End: Complemental strand, 25017586 - 25017555
Alignment:
Q  174 ctctggtggctccaaaaactcacgccaaatct 205  Q
    ||||||||||||||||||||||||||||||||    
T  25017586 ctctggtggctccaaaaactcacgccaaatct 25017555  T

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