View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_low_18 (Length: 355)
Name: NF17184_low_18
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 25940620 - 25940958
Alignment:
| Q |
1 |
taatttgccactctttgaacaacatagaactacagaagttattaaatcattgcctagttagagaattcaaattatagttgtaacactgttttaaataacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25940620 |
taatttgccactctttgaacaacatagaactacagaagttattaaatcattgcc-agttagagaattcaaattatagctgtaacactgttttaaataacg |
25940718 |
T |
|
| Q |
101 |
gtcatggtaattgttgtaatcaagtcgtggtgatccttgctattatggagaatcaaggtttaatttcggaaacttgaaaattatcatgtaata-tctaat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
25940719 |
gtcatggtaattgttgtaatcaagtcgtggtgatccttgctattatggagaatcaaggtttaatttcggcaacttgaaaattatcatgtaataatctaat |
25940818 |
T |
|
| Q |
200 |
tcgcaaatctttatttaactccctacactacgctacaataagatggtgtgaattcatagctactagcctacagctaagtagtatgtaccaataacgatgt |
299 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25940819 |
tcgcaaatctttattcaactccctacactacgctacaataagatggtgtgaattcatagctactagcctacagctaagtagtatgtaccaataacgatgt |
25940918 |
T |
|
| Q |
300 |
cacaaaaactcttttcaacacttatctgtgaagttcaatt |
339 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
25940919 |
cacaaaaactcttttcaacacttatctgtgaagttcaatt |
25940958 |
T |
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