View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_low_19 (Length: 344)
Name: NF17184_low_19
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 3991352 - 3991037
Alignment:
| Q |
17 |
catataacagttcgtttgactacaaattttatatgcattcatgtatgattttccatgtaaaaatttaagcacatgattctctgctatttgcactggaatt |
116 |
Q |
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| T |
3991352 |
catataacaattcgtttgactacaaattttatatgcattcatgtatgagtttccatgtaaaaatttaagcacatgattctctgctatttgcactggaatt |
3991253 |
T |
|
| Q |
117 |
tcctccaagagtatttataatttaaggaatcaagcttgattgtcttttctttcatggaaagttaaagtgtgcatcatttaaattaatatcctcttaatat |
216 |
Q |
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| T |
3991252 |
tcctccaagagtatttataatttaaggaatcaagcttgattgtcttttctttcatggaaagttaaagtgtgcatcatttaaattaatatcctcttaatat |
3991153 |
T |
|
| Q |
217 |
caagcttgatatagtcaccttttctgaaatccttaatgtgatcattctggcggtctgaagagcggaggttggtaatcctgcaacttctgctaagagaagg |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| |||||||||||||||||| |
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| T |
3991152 |
caagcttgatataatcaccttttctgaaatccttaatgtgatcattctggcggtctcaataacggaggttggtaatcctgccacttctgctaagagaagg |
3991053 |
T |
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| Q |
317 |
ccataatgggggatat |
332 |
Q |
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|||||||||||||||| |
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| T |
3991052 |
ccataatgggggatat |
3991037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 8348264 - 8348010
Alignment:
| Q |
17 |
catataacagttcgtttgactacaaattttatatgcattcatgtatgattttccatgtaaaaatttaagcacatgattctctgctatttgcactggaatt |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8348264 |
catataacagtttgtttgactacaaattttatatgcattcatgtatgagtttccatgtaaaaatttaagcacatgattctctgctatttgcactggaatt |
8348165 |
T |
|
| Q |
117 |
tcctccaagagtatttataatttaaggaatcaagcttgattgtcttttctttcatggaaagttaaagtgtgcatcatttaaattaatatcctcttaatat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| || | |
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| T |
8348164 |
tcctccaagagtatttataatttaaggaatcaagcttgattatcttttctttcacggaaagttaaagtgtgcatgatttaaattaatatcctatt-tttg |
8348066 |
T |
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| Q |
217 |
caagcttgatatagtcaccttttctgaaatccttaatgtgatcattctggcggtct |
272 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8348065 |
caagcatgatataatcaccttttctgaaatccttaatgtgatcattctggtggtct |
8348010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 42821357 - 42821611
Alignment:
| Q |
17 |
catataacagttcgtttgactacaaattttatatgcattcatgtatgattttccatgtaaaaatttaagcacatgattctctgctatttgcactggaatt |
116 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42821357 |
catataacagtttgtttgactacaaattttatatgcattcatgtatgagtttccatgtaaaaatttaagcacatgattctctgctatttgcactggaatt |
42821456 |
T |
|
| Q |
117 |
tcctccaagagtatttataatttaaggaatcaagcttgattgtcttttctttcatggaaagttaaagtgtgcatcatttaaattaatatcctcttaatat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| || | |
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| T |
42821457 |
tcctccaagagtatttataatttaaggaatcaagcttgattatcttttctttcacggaaagttaaagtgtgcatgatttaaattaatatcctatt-tttg |
42821555 |
T |
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| Q |
217 |
caagcttgatatagtcaccttttctgaaatccttaatgtgatcattctggcggtct |
272 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
42821556 |
caagcatgatataatcaccttttctgaaatccttaatgtgatcattctggtggtct |
42821611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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