View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_low_2 (Length: 825)
Name: NF17184_low_2
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-142; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 2 - 509
Target Start/End: Complemental strand, 38555619 - 38555084
Alignment:
| Q |
2 |
catagtttttggctataaatatttagtttatatattgtaatcgacacatccaatcaaacgaacaaatttaattcgcattt-catctctttacttttctac |
100 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
38555619 |
catagtttttggctataaatattgagtttatatcttgtaatcgacacatccaatcaaacgaacaagcttaattcacattttcatctctttacttttctac |
38555520 |
T |
|
| Q |
101 |
ctttatctatacttttatgagtttcttagtgatgctnnnnnnnnnnnnnnnnntaattgtacataatgttatgcttgaaaagttaggaaatccataacag |
200 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38555519 |
ctttatcta--cttttatgagtttcttagtgatgctaaaaaaatccaaaaaaacaattgtacataatgttatgcttgaaaagttaggaaatccataactg |
38555422 |
T |
|
| Q |
201 |
agagataaagttctttccttagtatcaatcacttgaagcaaaaggaaatgcaattgaggatatttagtcgaacttcgtctaagctattgctccatcaaac |
300 |
Q |
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||||| ||||||||||||| ||| |||||| ||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38555421 |
agagacaaagttctttcctcagt-tcaatcgcttgaagcaaaaggatacataattgaggatatttagtcgaacctcgtctaagctattgctccatcaaac |
38555323 |
T |
|
| Q |
301 |
aacttaacattcttataagaaagtttgtttaagggtgtacattgaatagtgaaaaagtcatttcaaaatcacatatccctgttcta-------------- |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || || |
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| T |
38555322 |
aacttaacattcttataagaaagtttgtttaagggtgtacatcgaatagtgaaaaagtcatttcaaaatcacatatccgttttatacataggtatataag |
38555223 |
T |
|
| Q |
387 |
-----tctattttaatggttgtttatcttttcattatatcaccc-----------gagttgattaattgcattctaccctataaagggagcaacattttc |
470 |
Q |
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| T |
38555222 |
attattctattttaattgttgtttatcttttcattatatcaccccttaaattaagaagttgattaattgtatgctaccctatatagggagcaacattttc |
38555123 |
T |
|
| Q |
471 |
attgaaataatatactctcaaattatacagtgatttcta |
509 |
Q |
| |
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| T |
38555122 |
attgaaataatatactctcaaattatatagtaatttcta |
38555084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 590 - 808
Target Start/End: Complemental strand, 38554661 - 38554447
Alignment:
| Q |
590 |
agatccaacaagcaatttgttcatttgtcgatgca--attcatcaaaagtattgttcacatcagcgttgttcgcatcacgaacaccgttcatcatgatca |
687 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
38554661 |
agatccaacaagc--tttgttcatttgtcgatgcactattcatcgaaagtattgttcacatcagcattgtttgcatcacgaacaccgttcatcatgatca |
38554564 |
T |
|
| Q |
688 |
ttgtccacattcgcgcattgctcccctcgttagtactg--ttcacaccgcgatcacaactacaataagtaaaatttagctataaactcgccaaaaaacga |
785 |
Q |
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|||||||||||||||||||| || |||||||||||||| |||||||| |||| |||||| |||||||||||||||||||||| | ||||||||| |
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| T |
38554563 |
ttgtccacattcgcgcattgttcacctcgttagtactgtattcacaccacgat------tacaatgagtaaaatttagctataaactcacgaaaaaacga |
38554470 |
T |
|
| Q |
786 |
caatcatctaaatgtgaacttat |
808 |
Q |
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| T |
38554469 |
caatcatctaaatgtgaacttat |
38554447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 567
Target Start/End: Complemental strand, 38554748 - 38554684
Alignment:
| Q |
503 |
atttctatatggcatcaaagcccattattttgcttctatgtaaaccatgtgcgtcgtcgtaacaa |
567 |
Q |
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||||||||||||||||||||||| | |||||||||||| |||||| | | |||||||||||||| |
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| T |
38554748 |
atttctatatggcatcaaagcccttgattttgcttctacataaaccctatacgtcgtcgtaacaa |
38554684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 509
Target Start/End: Original strand, 6486029 - 6486112
Alignment:
| Q |
426 |
gagttgattaattgcattctaccctataaagggagcaacattttcattgaaataatatactctcaaattatacagtgatttcta |
509 |
Q |
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|||||||||| ||| ||||| |||||||| |||| | |||| |||||||||||| ||||||||| ||||| ||| ||||||| |
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| T |
6486029 |
gagttgattagttgtattctctcctataaaaggagtaccattctcattgaaataaactactctcaagttatagagtaatttcta |
6486112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 493
Target Start/End: Complemental strand, 10863069 - 10863002
Alignment:
| Q |
426 |
gagttgattaattgcattctaccctataaagggagcaacattttcattgaaataatatactctcaaat |
493 |
Q |
| |
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|||||||||| ||| ||||| |||||||| |||||| |||| ||||||||||||||||||||||||| |
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| T |
10863069 |
gagttgattagttgtattctctcctataaaaggagcaccattctcattgaaataatatactctcaaat |
10863002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 426 - 489
Target Start/End: Complemental strand, 52681682 - 52681619
Alignment:
| Q |
426 |
gagttgattaattgcattctaccctataaagggagcaacattttcattgaaataatatactctc |
489 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||| ||||||||||||||||| ||||||| |
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|
| T |
52681682 |
gagttgattaattgtattctctcctataaaaggagcaccattttcattgaaataaattactctc |
52681619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 497
Target Start/End: Complemental strand, 52685812 - 52685741
Alignment:
| Q |
426 |
gagttgattaattgcattctaccctataaagggagcaacattttcattgaaataatatactctcaaattata |
497 |
Q |
| |
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|||||||||| ||| ||||| ||||| || |||||| ||||||||||||||||| ||||||||| ||||| |
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| T |
52685812 |
gagttgattagttgtattctctcctattaaaggagcaccattttcattgaaataaattactctcaagttata |
52685741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 488
Target Start/End: Complemental strand, 11959934 - 11959872
Alignment:
| Q |
426 |
gagttgattaattgcattctaccctataaagggagcaacattttcattgaaataatatactct |
488 |
Q |
| |
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|||||||||| ||| ||||| |||||||| |||||| ||||||||||||||||| ||||||| |
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| T |
11959934 |
gagttgattagttgtattctctcctataaatggagcaccattttcattgaaataaaatactct |
11959872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 426 - 480
Target Start/End: Original strand, 31306614 - 31306668
Alignment:
| Q |
426 |
gagttgattaattgcattctaccctataaagggagcaacattttcattgaaataa |
480 |
Q |
| |
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|||||||||| ||||||||| |||||||| |||||| |||| |||||||||||| |
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| T |
31306614 |
gagttgattagttgcattctctcctataaaaggagcaccattctcattgaaataa |
31306668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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