View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_low_20 (Length: 336)
Name: NF17184_low_20
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 40976147 - 40975829
Alignment:
| Q |
1 |
tgtgatttctttaatatattattttcctcgccacaacaattgcaagacccacatggtgtaggtggtattaggtgtaccgtagtagtcccttatcttacac |
100 |
Q |
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| T |
40976147 |
tgtgatttctttaatatattattttcctcgccacaacaattgcaagacccacctggtgtaggtggtgttaggtgtcccgtagtagtcccttatcttacac |
40976048 |
T |
|
| Q |
101 |
cttgacattctagcctcccagcatgtagagaccatgcaaaataaggcctagaatgagagttgggagtgtta-agttaacattaaaattcggagctcattg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
40976047 |
cttgacattctagcctcccagcatgtagagaccatgcaaaataaggcctagtctgagagttgggagtgttagagttaacattaaaattcggagttcattg |
40975948 |
T |
|
| Q |
200 |
ggatagatgtaaaatactttggcttcagatgtcaatgactaataagtttccaaatagaagacaactttgcatgcaaatcaacgattgtt-nnnnnnntat |
298 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40975947 |
ggatagatgtaaaatac-ttggcttcagatgtcaatgactaataagtttccaaatagaagacaactttgcatgcaaatcaacgattgttaaaaagaatat |
40975849 |
T |
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| Q |
299 |
caccctaaagtaatcaaact |
318 |
Q |
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|||||||||||||||||||| |
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| T |
40975848 |
caccctaaagtaatcaaact |
40975829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 29130610 - 29130540
Alignment:
| Q |
1 |
tgtgatttctttaatatattattttcctcgccacaacaattgcaagacccacatggtgtaggtggtattag |
71 |
Q |
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| T |
29130610 |
tgtgatttctttaatatattattttcctcgccacaacaattgcaagacccacctggcgtaggtggtgttag |
29130540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 34264069 - 34264114
Alignment:
| Q |
99 |
accttgacattctagcctcccagcatgtagagaccatgcaaaataa |
144 |
Q |
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| T |
34264069 |
accttgacattctggcctcccagcttgtagagaccatgcaaaataa |
34264114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 34263944 - 34263976
Alignment:
| Q |
19 |
ttattttcctcgccacaacaattgcaagaccca |
51 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34263944 |
ttattttcctcgccacaacaattgcaagaccca |
34263976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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