View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_low_21 (Length: 327)
Name: NF17184_low_21
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 41343264 - 41343581
Alignment:
| Q |
1 |
agaagaagaagaaaatagactttaatagtgggtatcatg-ataaagagataaaataagtaaataacat----gcattatttttttctttattcaatttaa |
95 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
41343264 |
agaagaagaagaaaatagactttaatagtgagtatcatggataaagagataaaataagtaaataacatacttgcattattttttgctttattcaatttaa |
41343363 |
T |
|
| Q |
96 |
aagnnnnnnnnnaaggatactcacttcaaaagttaaatgtattttcataaaataaacggattctattatactttgagtagttgatataaatgtatacact |
195 |
Q |
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||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41343364 |
aagtttttttttaaggatactcacttcaaaagttaaatgtattttcacaaaataaacggattctattatactttgagtagttgatataaatgtataccct |
41343463 |
T |
|
| Q |
196 |
accnnnnnnnnnn-gttaatgtaaaaatatagaaaaatacgcactggctgtcctgaaaagtgtaggatatactttaaaaagtggtgttttaataacctga |
294 |
Q |
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||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41343464 |
accaaaaaaaaaaagttaatgtaaaaatatagaaaaatacgcacgggctatcctgaaaagtgtaggatatactttaaaaagtggtgttttaataacctga |
41343563 |
T |
|
| Q |
295 |
agggtgtgaaaagtaatt |
312 |
Q |
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|||||||||||||||||| |
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| T |
41343564 |
agggtgtgaaaagtaatt |
41343581 |
T |
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