View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_low_22 (Length: 301)
Name: NF17184_low_22
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 40763968 - 40764255
Alignment:
| Q |
1 |
cagaatcctcctcctactgaatctgatgttgaagctgctaagcttgttgctcaggagaaggagaaggagattactgctgctgtggatgaacttaaaaagg |
100 |
Q |
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| T |
40763968 |
cagaatcctcctcctactgaatctgatgttgaagctgctaagcttgttgctcaggagaaggagaaggagattactgctgctgtggatgaacttaaaaaag |
40764067 |
T |
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| Q |
101 |
ctaaacggaatgtatccaagctggaagaaagatctaaacttcagcccggtattcctcgaaaagatggaaaggtagattatgctaaagatttctttgcccg |
200 |
Q |
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| T |
40764068 |
ctaaacggaatgtatccaagctggaagaaagatctaaacttcagcccagtattcctcgaaaggatggaaagatagattatgctaaagatttctttgcccg |
40764167 |
T |
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| Q |
201 |
tcaagcatttttgactgtttctggtcagcttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatacatttggcccaacattt |
288 |
Q |
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| T |
40764168 |
tcaagcatttttgactgtttctggtcagcttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatacatttggcccaacattt |
40764255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 40763848 - 40763908
Alignment:
| Q |
1 |
cagaatcctcctcctactgaatctgatgttgaagctgctaagcttgttgctcaggagaagg |
61 |
Q |
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| T |
40763848 |
cagaatcctcctcctactgaatctgatgttgaagctgctaagcttgttgttcaggagaagg |
40763908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 62 - 288
Target Start/End: Original strand, 42911676 - 42911902
Alignment:
| Q |
62 |
agaaggagattactgctgctgtggatgaacttaaaaaggctaaacggaatgtatccaagctggaagaaagatctaaacttcagcccggtattcctcgaaa |
161 |
Q |
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| T |
42911676 |
agaaggagattagtgctgctgtggctgaacttaaaaaagcaaaagaaaatgtatccaagctggaggaaagatctaaacttcagcccggtattcctcgaaa |
42911775 |
T |
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| Q |
162 |
agatggaaaggtagattatgctaaagatttctttgcccgtcaagcatttttgactgtttctggtcagcttcaagttgagtcttatgcgtgtgctcttagt |
261 |
Q |
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| T |
42911776 |
ggacggaaaggtggattatactaaagatttctttgcccgtcaagcgtttttgactgtttctggtcagcttcaagttgagtcttatgcttgtgctcttagt |
42911875 |
T |
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| Q |
262 |
agtgtgtatacatttggcccaacattt |
288 |
Q |
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| T |
42911876 |
cgcgtgtatacatttggcccgacattt |
42911902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 42911576 - 42911636
Alignment:
| Q |
1 |
cagaatcctcctcctactgaatctgatgttgaagctgctaagcttgttgctcaggagaagg |
61 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
42911576 |
cagaatcctcctccaactgaagctgatgttgaagctgctaagcttgttgttcaggagaagg |
42911636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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