View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17184_low_26 (Length: 251)
Name: NF17184_low_26
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 5176164 - 5175932
Alignment:
| Q |
1 |
gtctcaatcatctgcatgttgagattgtagtcttgatgcatggcgttcacatgtgttggaaagaaggttcacgtaaaatcatgttacatcgactcaaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5176164 |
gtctcaatcatctgcatgttgagattgtagtcttgatacatggcgttcacatgtgttggaaagaaggttcacgtaaaatcatgttacatcgactcaaaac |
5176065 |
T |
|
| Q |
101 |
acactctaaatgtttcaaagtgttggtgttactacacaacatttagaccgtgagatagtcgttatttgtcaataaatgatcaaatattggagtcttcatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
5176064 |
acactctaaatgtttcaaagtgttggtgttactacacaacatttaggccgtgagatagtcgttattcgtcaataaatgatcaaatattggagtcttcaat |
5175965 |
T |
|
| Q |
201 |
tgcatcaaatgtagcatgaagggaacacgtgcc |
233 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
5175964 |
tgcatcaaatgttgcatgaagggaacacgtgcc |
5175932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 5180440 - 5180217
Alignment:
| Q |
12 |
ctgcatgttgagattgtagtcttgatgcatggcgttcacatgtgttggaaagaaggttcacgtaaaatcatgttacatcgactcaaaac--acactctaa |
109 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |||| |||||| || |
|
|
| T |
5180440 |
ctgcaagttgagattgtagccttgatgcatggcgttcgcatgtgttggaaagaaggttcgcgtaaaatcatgttacattgactagaaacatacactccaa |
5180341 |
T |
|
| Q |
110 |
atgtttcaaagtgttggtgttactacacaacatttagaccgtgagatagtcgttatttgtcaataaatgatcaaatattggagtcttcatttgcatcaaa |
209 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| | ||||||| |||||||| ||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
5180340 |
ttgtttccaattgttggtgttactacacaacatttaagcaatgagataatcgttattcgtcaatatatgatcaaatattggagtcttcaactgcatcaaa |
5180241 |
T |
|
| Q |
210 |
tgtagcatgaagggaacacgtgcc |
233 |
Q |
| |
|
|| ||||||| ||||| ||||| |
|
|
| T |
5180240 |
cgttccatgaagtgaacatgtgcc |
5180217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University