View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17184_low_30 (Length: 206)
Name: NF17184_low_30
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_30 |
 | |
|
| [»] chr2 (7 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 34984949 - 34985154
Alignment:
| Q |
1 |
aacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacctagttttgatttgtgtcgaaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34984949 |
aacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacctagttttgatttgtgtcgaaacca |
34985048 |
T |
|
| Q |
101 |
aaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaagataagtccaactaaactagttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34985049 |
aaattcaatgtatacaatggaagtttttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaagataagtccaactaaactagttgaa |
34985148 |
T |
|
| Q |
201 |
ttactt |
206 |
Q |
| |
|
|||||| |
|
|
| T |
34985149 |
ttactt |
34985154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 27542683 - 27542492
Alignment:
| Q |
15 |
gttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacctagttttgatttgtgtcgaaaccaaaattcaatgtata |
114 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
27542683 |
gttgatgcaacattaatggagattaataggttggttgaagttggagaattttaaactttacctagttttgatttgtgtcgaaaccaaaatccaatgtaca |
27542584 |
T |
|
| Q |
115 |
caatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaagataagtccaactaaactagttgaattactt |
206 |
Q |
| |
|
||||| |||| |||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27542583 |
caatgaaagtttttggacaaggtttgcagattgaagcttttcggaacatggcattgattaagataagtccaactaaactagttgaaatactt |
27542492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 27543692 - 27543853
Alignment:
| Q |
1 |
aacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacctagttttgatttgtgtcgaaacca |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27543692 |
aacaatttggttgggttgatgcaacattaatggagattgttaggttgcttggagttggagagcttcaaactttacctagttttgatttgtgtcgaaacca |
27543791 |
T |
|
| Q |
101 |
aaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggaca |
162 |
Q |
| |
|
|||| ||||||| ||||||||||| |||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
27543792 |
aaatccaatgtacacaatggaagtttttggacatggtttgcagattgaagcttctcaggaca |
27543853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 27583016 - 27583223
Alignment:
| Q |
1 |
aacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacctagttttgatttgtgtcgaaacca |
100 |
Q |
| |
|
|||||||||| | ||||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27583016 |
aacaatttggtcgggttgatgcaacatcaatggagattgttaggttggttggagttggagagcttcaaactttacctagttttaatttgtgtcgaaacca |
27583115 |
T |
|
| Q |
101 |
aaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggca--ttgattaagataagtccaactaaactagttg |
198 |
Q |
| |
|
|||| ||||||| ||||||||| | |||| |||||||||| ||||||||||||||| |||| |||| |||||||| ||| || |||||||||||| || |
|
|
| T |
27583116 |
aaatccaatgtacacaatggaaatttttggacaaggtttgttgattgaagcttctcgagacatggcatgttgattaatatatgttcaactaaactagatg |
27583215 |
T |
|
| Q |
199 |
aattactt |
206 |
Q |
| |
|
|||||||| |
|
|
| T |
27583216 |
aattactt |
27583223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 27581588 - 27581385
Alignment:
| Q |
1 |
aacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacctagttttgatttgtgtcgaaacca |
100 |
Q |
| |
|
|||||||||| | ||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
27581588 |
aacaatttggtcgggttgatgcaacattaatggagattattaggttggttgaagttggagagcttcaaactttacctagttttgatttgtg--aaaatca |
27581491 |
T |
|
| Q |
101 |
aaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaagataagtccaactaaactagttgaa |
200 |
Q |
| |
|
|||| ||||||| ||||||||||| | || ||||||||| |||||||||| || |||||| ||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
27581490 |
aaatccaatgtacacaatggaagtttctggacaaggtttatagattgaagcctcgtgggacatggcattggttaagataattccaactaaactagttgaa |
27581391 |
T |
|
| Q |
201 |
ttactt |
206 |
Q |
| |
|
|||||| |
|
|
| T |
27581390 |
ttactt |
27581385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 34980537 - 34980707
Alignment:
| Q |
36 |
attgttaagttggttgaagttggagagcttcaaactttacctagttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaag |
135 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |||||| |||||| |||| |||||| |||| ||||| |
|
|
| T |
34980537 |
attgttaagatggttgaagttggagatcttgaaactatacctagttttgatttgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggacaag |
34980636 |
T |
|
| Q |
136 |
gtttgcagattgaagcttctcgggacaaggcattgattaagataagtccaactaaactagttgaattactt |
206 |
Q |
| |
|
|||| | |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34980637 |
gttttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattactt |
34980707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 34992918 - 34993109
Alignment:
| Q |
15 |
gttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacctagttttgatttgtgtcgaaaccaaaattcaatgtata |
114 |
Q |
| |
|
||||||||| ||||| ||||| |||||||| |||||||||||||||| |||||||| | ||||||||||||| |||||||| |||| || |||||| | |
|
|
| T |
34992918 |
gttgatgcatcattaatggagcttgttaagatggttgaagttggagatcttcaaacactgcctagttttgattcgtgtcgaatccaagatccaatgtcaa |
34993017 |
T |
|
| Q |
115 |
caatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaagataagtccaactaaactagttgaattactt |
206 |
Q |
| |
|
||| ||| || |||| |||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34993018 |
caaaggacgtttttggacaaggtttgcagattgaaggttcacgggatatggcattgattaagataagtccaactaaactagttgaagtactt |
34993109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University