View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17184_low_4 (Length: 659)
Name: NF17184_low_4
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_4 |
 | |
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| [»] scaffold1801 (1 HSPs) |
| | |
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| [»] scaffold1118 (1 HSPs) |
| | |
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| [»] scaffold0902 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 20421707 - 20422145
Alignment:
| Q |
17 |
aatatcttaaactccttgcttttgcccctaatcagaattttaaatgatgtacaatttatttgatc--------acatggtaaaaaactgaagagaaacta |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
20421707 |
aatatcttaaactccttgcttttgcccctaatcagaattttaaatgatgtacaatttatttgatcctttcctaacatagtaaaaaactgaagagaaactg |
20421806 |
T |
|
| Q |
109 |
tataattgcatacttgatctctgttaataatccattcaaattatagtcattgcatcttagaggaagtatacataagtggttggcagatagcatctcagaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20421807 |
tataattgcatacttgatctctgttaataatccattcaaattatagtcattgcatcttagaggaagtatacataagtggttggcagatagcatctcagaa |
20421906 |
T |
|
| Q |
209 |
aattgatgtgcagttttaaacctcgtggtttcaatttgacacttttcattcccagtaacctttttctctttgttaggactttcaagtataattgctttgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20421907 |
aattgatgtgcagttttaaacctcgtggtttcaatttgacacttttcattcccagtaacctttttctctttgttaggactttcaagtataattgctttgt |
20422006 |
T |
|
| Q |
309 |
ctatatgaatgagaa-tttggagataatttcagtcatctcagtctgtttttggaatatttctggtgatatatcttcgatactttctaaccaactaggaac |
407 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
20422007 |
ttgtatgaatgagaaatttggagataatttcagtcatctcagtctgttttaggaatatttctggtgatacatcttcgatactttctaaccaactaggaac |
20422106 |
T |
|
| Q |
408 |
acaat-----tgtcatctagatacgatacatctaactaa |
441 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
20422107 |
acaacacaactgtcatctagatacgatacatctaactaa |
20422145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 477 - 588
Target Start/End: Original strand, 20422146 - 20422257
Alignment:
| Q |
477 |
attattcctgaataaattatttcttagttgaataaattattgtttaaattccttatgtaagtgaaattttaactttaattaatatcttaaattccttggc |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20422146 |
attattcctgaataaattatttcttagttgaataaattattgtttaaattccttatgtaagtgaaattttaactttaattaatatcttaaattccttggc |
20422245 |
T |
|
| Q |
577 |
tgacattaaata |
588 |
Q |
| |
|
|||||||||||| |
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|
| T |
20422246 |
tgacattaaata |
20422257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 593 - 631
Target Start/End: Original strand, 20423323 - 20423361
Alignment:
| Q |
593 |
tatgcatgagactattcatgttgttatgcttggtttctt |
631 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20423323 |
tatgcatgagactattcatgttgttatgcttggtttctt |
20423361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 9884219 - 9883904
Alignment:
| Q |
17 |
aatatcttaaactccttgcttttgcccctaatcagaattttaaatgatgtacaatttatttgatc--------acatggtaaaaaactgaagagaaacta |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
9884219 |
aatatcttaaactccttgcttttgcccctaatcagaattttaaatgatgtacaatttatttgatcctttcctaacatggtaaaaaactgaagagaaactg |
9884120 |
T |
|
| Q |
109 |
tataattgcatacttgatctctgttaataatccattcaaattatagtcattgcatcttagaggaagtatacataagtggttggcagatagcatctcagaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9884119 |
tataattgcatacttgatctctgttaataatccattcaaattatagtcattgcatcttagaggaagtatacataagtggttggcagatagcatctcagaa |
9884020 |
T |
|
| Q |
209 |
aattgatgtgcagttttaaacctcgtggtttcaatttgacacttttcattcccagtaacctttttctctttgttaggactttcaagtataattgctttgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9884019 |
aattgatgtgcagttttaaacctcgtggtttcaatttgacacttttcattcccagtaacctttttctctttgttaggactttcaagtataattgctttgt |
9883920 |
T |
|
| Q |
309 |
ctatatgaatgagaat |
324 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
9883919 |
ctatatgaataagaat |
9883904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 9883153 - 9883115
Alignment:
| Q |
593 |
tatgcatgagactattcatgttgttatgcttggtttctt |
631 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9883153 |
tatgcatgagactattcatgttgttatgcttggtttctt |
9883115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 15607528 - 15607744
Alignment:
| Q |
17 |
aatatcttaaactccttgcttttgcccctaatcagaatttt--aaatgatgtacaatttatttgatc---acatggtaaaaaactgaa-gagaaactata |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| |||||||||| || ||||||||||| |
|
|
| T |
15607528 |
aatatcttgaactccttgcttttgcccctaatcagaatttttaaaatgatgta-----tatttgatcctaacatagtaaaaaactaaaagagaaactata |
15607622 |
T |
|
| Q |
111 |
taattgcatacttgatctctgttaataatccattcaaattatagtcattgcatcttagaggaagtatacataagtggttggcagatagcatctcagaaaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| |||| |||||||||| |
|
|
| T |
15607623 |
taattgcatacttgatctctgttaataatccattcaaattatagttattgcatcttagaggaagtattgaaaagtggttggcaggtagcttctcagaaaa |
15607722 |
T |
|
| Q |
211 |
ttgatgtgcagttttaaacctc |
232 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
15607723 |
tcgatgtgcagttttaaacctc |
15607744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 262 - 363
Target Start/End: Original strand, 15607747 - 15607853
Alignment:
| Q |
262 |
agtaacctttttctctttgttaggactttcaagtataattgctttgtctat--atgaatgag-aatttggagataatttca--gtcatctcagtctgttt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15607747 |
agtaacctttttctctttgttaggactttcaagtacaattgctttgtctgtgcaggaatgagaaatttggagataatttcactgtcatctcagtctgttt |
15607846 |
T |
|
| Q |
357 |
ttggaat |
363 |
Q |
| |
|
| ||||| |
|
|
| T |
15607847 |
taggaat |
15607853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 27441522 - 27441590
Alignment:
| Q |
505 |
tgaataaattattgtttaaattccttatgtaagtgaaattttaactttaattaatatcttaaattcctt |
573 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
27441522 |
tgaataaattattgtttaaattccttatgcaagtgaaattttaactttgattaatatcgttaattcctt |
27441590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 505 - 588
Target Start/End: Original strand, 27444310 - 27444393
Alignment:
| Q |
505 |
tgaataaattattgtttaaattccttatgtaagtgaaattttaactttaat-taatatcttaaattccttggctgacattaaata |
588 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| ||||||||| || ||||||||| ||||| | |||||||||||||| |
|
|
| T |
27444310 |
tgaataaattattgtttaaattccttatgcaattgaaa-tttaacttttatataatatctttgattccctagctgacattaaata |
27444393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 631
Target Start/End: Complemental strand, 4651707 - 4651668
Alignment:
| Q |
592 |
ttatgcatgagactattcatgttgttatgcttggtttctt |
631 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
4651707 |
ttatgcatgagactattcatgttgttgtgcttgatttctt |
4651668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 27440660 - 27440720
Alignment:
| Q |
380 |
cttcgatactttctaaccaactaggaacacaattgtcatctagatacgatacatctaacta |
440 |
Q |
| |
|
|||||||||||| | |||||||| | || ||||||||||||||||| |||| |||| |||| |
|
|
| T |
27440660 |
cttcgatacttttttaccaactaagcacgcaattgtcatctagatatgatatatcttacta |
27440720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 1027 - 1075
Alignment:
| Q |
17 |
aatatcttaaactccttgcttttgcccctaatcagaattttaaatgatg |
65 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1027 |
aatatcttgaagtccttgcttttgcccctgatcagaattttaaatgatg |
1075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 592 - 631
Target Start/End: Original strand, 37077633 - 37077672
Alignment:
| Q |
592 |
ttatgcatgagactattcatgttgttatgcttggtttctt |
631 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37077633 |
ttatgcatgagactattcatgttgttgtgcttggtttctt |
37077672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 2023 - 1976
Alignment:
| Q |
17 |
aatatcttaaactccttgcttttgcccctaatcagaattttaaatgatg |
65 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
2023 |
aatatcttcaagtccttgcttttgccc-taatcataattttaaatgatg |
1976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 1798 - 1766
Alignment:
| Q |
29 |
tccttgcttttgcccctaatcagaattttaaat |
61 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
1798 |
tccttgcttttgctcctaatcagaattttaaat |
1766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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