View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17184_low_5 (Length: 608)
Name: NF17184_low_5
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 94 - 592
Target Start/End: Original strand, 13779268 - 13779767
Alignment:
| Q |
94 |
tcaaaacgacactttaaaaggaacagagggcgtattaagtactacgacgaacgaaatgccacacagtgcaggacatgggcaccacaaataacacaactga |
193 |
Q |
| |
|
||||||||| | || ||||||||| ||||| |||| || ||||||||| ||| ||| |||||||| |||||||||||||||||||||| |||||| || |
|
|
| T |
13779268 |
tcaaaacgaaaattaaaaaggaacggagggagtatgaaatactacgaccaacaaaaggccacacattgcaggacatgggcaccacaaaagacacaattgg |
13779367 |
T |
|
| Q |
194 |
tagaacaatattttccacagattttgcaccacttatttgggaatactatgccaatggaacaacacgactttaacacctaaactgcagatttttgtcatat |
293 |
Q |
| |
|
||||||| |||| || |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| || |||||||| |||| |
|
|
| T |
13779368 |
cagaacaaattttttcatagattttgcaccacttatttgggaatactatgtcaatggaacaacacgaatttaacacctaaattggagatttttatcatta |
13779467 |
T |
|
| Q |
294 |
caattcatctcagtggccaacagctagtaaagcaaataacagcaaaagcagaaagtaaa-ccctgccaaactacacctaaagctgctataattttgacca |
392 |
Q |
| |
|
|||||| |||| |||| ||||||||| |||||||||| ||||||||| | |||| ||| | ||| ||||| |||||||||| ||||||||||||||||| |
|
|
| T |
13779468 |
caattcctctcggtgggaaacagctaggaaagcaaatagcagcaaaagtataaaggaaagcactgtcaaaccacacctaaagttgctataattttgacca |
13779567 |
T |
|
| Q |
393 |
aggaccataacacaacacattgatatgcggataaacagcaacatccccatgtgaagcaacaacaccagtaatataaaccatgcacactacactctataaa |
492 |
Q |
| |
|
| ||||||||||||||| |||| || | |||||| ||||||||||||||||||||||||| || ||||||||| ||||| ||||||||||| ||| |
|
|
| T |
13779568 |
acgaccataacacaacattatgatttgtaaaaaaacagtaacatccccatgtgaagcaacaacaacaataatataaattatgcatactacactctacaaa |
13779667 |
T |
|
| Q |
493 |
taagaccatcctccccacacattcttcactccaatcacaaacaatttgttcacagttcaagaaatgggtaagtttttcctcatctgcattactttatttg |
592 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| ||||||||| ||||||| |||||||| |||| |
|
|
| T |
13779668 |
aaagatcatcctccccacacattcttcactccaatcataaacaatttgttcacagtacaaaaaatggataagttttttctcatctagattactttgtttg |
13779767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 5710053 - 5710020
Alignment:
| Q |
17 |
tgattagtaaattaaaatgatgtgataataggaa |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5710053 |
tgattagtaaattaaaatgatgtgataataggaa |
5710020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University