View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_low_6 (Length: 591)
Name: NF17184_low_6
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_6 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 21 - 575
Target Start/End: Complemental strand, 17896 - 17342
Alignment:
| Q |
21 |
gcaagcatattttacttagtcagtgtcattagatatcctctgtttaggtattgctacagatagttccatataattttttgtttgggtgagcacttggttg |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17896 |
gcaagcatattttacttagtcagtgtcattagatatcctctgtttgggtattgctacagatagttccatataattttttgtttgggtgagcacttggttg |
17797 |
T |
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| Q |
121 |
gattcannnnnnnnnnnnnnnnnactttcaaaaattacactcacccaaaaatcacactgctattgtctggtttggtatggagattaccactaacttcgtc |
220 |
Q |
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| T |
17796 |
gattcatttttgttttgttttt-actttcaaaaatcacactcacccaaaaatcacactgctattgtctggtttggtatggagattaccactaacttcgtc |
17698 |
T |
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| Q |
221 |
aaactcaagagaatcattcacaaaggatccaggggttgtacttccatctccataagttatgctgtatggacaagacatgtcttgattgcatccagaaatt |
320 |
Q |
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|||| ||||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17697 |
aaacgtaagagaatcgttcacaaaggatccggaggttgtacttccatctctataagttatgctgtatggacaagacatgtcttgattgcatccagaaatt |
17598 |
T |
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| Q |
321 |
ataccagaatatgtgtcggtgcagaaactgtcaccacaaggaacgacatttgaagttttcgagccgttagggtcatagagggttaaatccatctgcaaca |
420 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17597 |
ggaccagaatatgcgtcggtgcagaaactgtcaccacaaggaacgacatttgaagttttcgagccgttagggtcatagagggttaaatccatctgcaaca |
17498 |
T |
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| Q |
421 |
tgataattaaagctacaactctcaatattcttatatttcaaccag-aaagcatgaatattaaaaaagtttagttgcttggaacatgctgtgcagcctaca |
519 |
Q |
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| T |
17497 |
tgataattaaagcagcaactctcaatattcttatatttcaaccagaaaagcatgaatattaaaaaagtttagttgcttgggacatgctgtgcagcctaca |
17398 |
T |
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| Q |
520 |
caattcacccaaagaatgtcacttcctgtgtcaacttgtgacgtgtgcctctctgt |
575 |
Q |
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| T |
17397 |
caattcacccaaagaatgtcacttcttttgtcaacttgtgacgtgtgcctctctgt |
17342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 152 - 493
Target Start/End: Original strand, 30500498 - 30500839
Alignment:
| Q |
152 |
aaattacactcacccaaaaatcacactgctattgtctggtttggtatggagattaccactaacttcgtcaaactcaagagaatcattcacaaaggatcca |
251 |
Q |
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| T |
30500498 |
aaatcacactcacccaaaaatcacactgctattgtctggtttggtatggagattaccactaacttcgtcgaacgtaagagaatcattcacaaaggatccg |
30500597 |
T |
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| Q |
252 |
ggggttgtacttccatctccataagttatgctgtatggacaagacatgtcttgattgcatccagaaattataccagaatatgtgtcggtgcagaaactgt |
351 |
Q |
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| T |
30500598 |
gaggttgtacttccatctccataagttatgctatatggacaggacatgtcttgcttgcatccagaaattggaccagaatatgtgtcggtgcagaaaccgt |
30500697 |
T |
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| Q |
352 |
caccacaaggaacgacatttgaagttttcgagccgttagggtcatagagggttaaatccatctgcaacatgataattaaagctacaactctcaatattct |
451 |
Q |
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| T |
30500698 |
caccacaaggaaccgcatttgaagttttcgagccgttagggtcatagagggttaaatccatctgcaacatgataattaaagcagcaactctcaatattct |
30500797 |
T |
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| Q |
452 |
tatatttcaaccagaaagcatgaatattaaaaaagtttagtt |
493 |
Q |
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| T |
30500798 |
tatatttcaaccagaaagcatgaatattaaaaaagtttagtt |
30500839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 495 - 558
Target Start/End: Original strand, 30500866 - 30500929
Alignment:
| Q |
495 |
cttggaacatgctgtgcagcctacacaattcacccaaagaatgtcacttcctgtgtcaacttgt |
558 |
Q |
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| T |
30500866 |
cttgggacatgctgtgcagcctgcacaattcacccaaagaatgtcacttcctgtgtcaacttgt |
30500929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 24032104 - 24032167
Alignment:
| Q |
32 |
ttacttagtcagtgtcattagatatcctctgtttaggtattgctacagatagttccatataatt |
95 |
Q |
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| T |
24032104 |
ttacttagtgagtggcattagatatcctctgtttgggtatttctacagatagttccatataatt |
24032167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 557
Target Start/End: Complemental strand, 35017978 - 35017938
Alignment:
| Q |
517 |
acacaattcacccaaagaatgtcacttcctgtgtcaacttg |
557 |
Q |
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| T |
35017978 |
acacaattcacccacagaatatcacttcctgtatcaacttg |
35017938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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