View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17184_low_7 (Length: 581)
Name: NF17184_low_7
Description: NF17184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17184_low_7 |
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| [»] scaffold0211 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 2622446 - 2622880
Alignment:
| Q |
1 |
ttaataccattaggccaacccaagtgggttgtaggaatataaattctgatgtaaaca--tcgctgattcgctgttggcattcctcattatgctatacggc |
98 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2622446 |
ttaataccactaggccaacccaagtgggttgtaggaatataaattctgatgtaaacacatcgctgattcgctgttggcattcctcattatgctatacggc |
2622545 |
T |
|
| Q |
99 |
attgcagagtcttctgaaaaaatgcttaaacttcttaaagatttctcttttatacatgcgagtaaagatgtggtgtgtggtgtatgacatctagaaagac |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2622546 |
attgcagagtcttctgaaaaaatgcttaaacttcttaaagatttctcttttatacatgtgagtaaagatgtggtgtgtggtgtatgacatctagaaagac |
2622645 |
T |
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| Q |
199 |
aaaggaagtccccnnnnnnntctatcttttgaaatgttgcacatggataattttttgataaccgcggatgattatatcgatatacctgggttactatgtt |
298 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
2622646 |
aaaggaagtccccaaaaaaatctatcttttgaaatgttgcacatggataattttttgataaccgcggatgattatatggatatacctgggttcctatgtt |
2622745 |
T |
|
| Q |
299 |
gaaaagaaaatttctggagcagtccttgatgcacaattttattgcatatgctgtgaagtaacataatgcagtaataaaaataataagaacaaagaatgga |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2622746 |
gaaaagaaaatttctggagcagtccttgatgcacaattttattgcatatgctgtgaagtaacataatgcagtaataaaaataataagaacaaagaatgga |
2622845 |
T |
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| Q |
399 |
ctagctttgcgaccactctcttccgattcttcccg |
433 |
Q |
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| T |
2622846 |
ctagctttgcgaccactctcttccgattcttcccg |
2622880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 487 - 566
Target Start/End: Original strand, 2622946 - 2623025
Alignment:
| Q |
487 |
cgtttgaagaggccaaaaggcaaaagttttattggacaacttaggcacaggtaatgtctattctatagcatactgcatat |
566 |
Q |
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| T |
2622946 |
cgtttgaagaggccaaaaggcaaaagttttattggacaacttaggcacaggtaatgtctattctatagcatactgcatat |
2623025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 4439026 - 4439055
Alignment:
| Q |
1 |
ttaataccattaggccaacccaagtgggtt |
30 |
Q |
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| T |
4439026 |
ttaataccattaggccaacccaagtgggtt |
4439055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 24080 - 24052
Alignment:
| Q |
3 |
aataccattaggccaacccaagtgggttg |
31 |
Q |
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| T |
24080 |
aataccattaggccaacccaagtgggttg |
24052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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