View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_high_1 (Length: 635)
Name: NF17185_high_1
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 69 - 619
Target Start/End: Complemental strand, 31769546 - 31768997
Alignment:
| Q |
69 |
atttgaattgtgtatataggactatatttggcaaacatttaagatttcagaaaatcaaattgatacgatttattttgtatgcaccaataaggaccaattg |
168 |
Q |
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| T |
31769546 |
atttgaattgtgtatataggactatatttggcaaacatttaagatttcagaaaatcaaattgatacgatttattttgtatgcaccaataaggaccaattg |
31769447 |
T |
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| Q |
169 |
gaatataacatttttggcaaaagtggatcccctattggtgacaagaccctgaaatgagcaccaaaaagaagctgtccaatgtgaaggtgagcaagatatg |
268 |
Q |
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| T |
31769446 |
gaatataacatttttggcaaaagtggatcccctattggtgacaagaccctgaaatgagcaccaaaaagaagctgtccaatgtgaaggtgagcaagatatg |
31769347 |
T |
|
| Q |
269 |
acaccaatattaataattttggaagggcactagacaggacacccccactagaccagaagaatcagcctttaaaatcaaacccacccaccatacattatta |
368 |
Q |
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| T |
31769346 |
acaccaatattaataattttggaagggcactagacaggacacccccactagaccagaagaatcagcctttaaaatcaaacccacccaccatacattatta |
31769247 |
T |
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| Q |
369 |
aggcttacaccaggggaccgccagtactaagctgctgtatgcataattgcataggacctttccaaacttattaataatatctttcaaagcttcttctnnn |
468 |
Q |
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| T |
31769246 |
aggcttacaccaggggaccgccagtactaaactgctgtatgcataattgcatagggcctttctaaacttattaataatatctttcaaagcttcttctaaa |
31769147 |
T |
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| Q |
469 |
nnnnnnnnttcttttaaagctttctaaacatattaataatatcttttaaagcttcttctgaaaataaaataaaattaagtgactcttatgcaagtgtttc |
568 |
Q |
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| T |
31769146 |
aaaaaaaa-tcttttaaagctttctaaacatattaataatatcttttaaagcttcttctgaaaataaaataaaattaagtgactcttatgcaagtgtttc |
31769048 |
T |
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| Q |
569 |
atttgatctaagacaaacttatttttgaaaatagtttgaaattcttatatt |
619 |
Q |
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| T |
31769047 |
atttgatctaagacaaacttatttttgaaaatagtttgaaattcttatatt |
31768997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 31769582 - 31769532
Alignment:
| Q |
10 |
acatcatcaagtaattgcctacacactccaaaaaagatttgaattgtgtat |
60 |
Q |
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| T |
31769582 |
acatcatcaagtaattgcctacacactccaaaaaagatttgaattgtgtat |
31769532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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