View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_high_11 (Length: 372)
Name: NF17185_high_11
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 4 - 357
Target Start/End: Complemental strand, 37342192 - 37341839
Alignment:
| Q |
4 |
agaccgcgtattgttaaactttgtggaagccctgtcctgcaattggatggtgacctacaataggttattggccattgtagagctaggacaagaaaatcgt |
103 |
Q |
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| T |
37342192 |
agaccgcgtattgttaaactttgtggaagccctgtcctgcaattggatggtggcctacaataggttattggccattgtagagctaggacaagaaaatcgc |
37342093 |
T |
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| Q |
104 |
atgacattaccgtaggtaagaagaaaaataaacatatcaagaaaactagacgtgccattgtaggaaggtgcaaattttctattgcgaatgaacttgttgt |
203 |
Q |
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| T |
37342092 |
atgacattaccgtaggtaagaagaaaaataaacatatcaagaaaactagacgtgccattgtaggaaggtgcaaattttctattgcgaatgagtttgttgt |
37341993 |
T |
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| Q |
204 |
ttgtgaaattggtttttgtatatacagctgtataaatctataatgtgatatcctcttgttctcccctctccttagtctggccattaatgcaattattata |
303 |
Q |
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| T |
37341992 |
ttgtgaaattggtttttgtatatatagctgtataaatctataatgtgataccctcttgttctcccctctccttagtcttgccattaatgcaattattata |
37341893 |
T |
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| Q |
304 |
tcaataattctcctaactaaaaaatgggatcaagctttaaaatcccgatatttt |
357 |
Q |
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| T |
37341892 |
tcaataattctcctaactaaaaaatgggatcaagctttaaaatcccgatatttt |
37341839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 37334788 - 37334833
Alignment:
| Q |
9 |
gcgtattgttaaactttgtggaagccctgtcctgcaattggatggt |
54 |
Q |
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| T |
37334788 |
gcgtattgttaaacttaatggaagccatgtcctgcaattggatggt |
37334833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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