View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_high_15 (Length: 326)
Name: NF17185_high_15
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 35577135 - 35576929
Alignment:
| Q |
19 |
aaccaaattaaaaacaagttaaaaagtattgagatggatgtggtgatataggtttagtttgtgtttatcttatattgcggttctatttgattttgttcgg |
118 |
Q |
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| T |
35577135 |
aaccaaattaaaaacaagttaaaaagtattgagatggatggggtgatataagtttagtgtgtgtttatcttatatcgtggttccatttgattttgttcgg |
35577036 |
T |
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| Q |
119 |
ttagtaaaataaaaactacaagtcaaattgaacagtgtaattgaatagaaatataacactaaaatatatgaatcaaatgcgattttttacaatcttaaat |
218 |
Q |
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| T |
35577035 |
ttggtaaaataaaaactacaagtcaaactgaaccgtataattgaatcaaaatatgacactaaaatatatgaatcaaatgagattttttacgatcttaaat |
35576936 |
T |
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| Q |
219 |
ctaaatt |
225 |
Q |
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||||||| |
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| T |
35576935 |
ctaaatt |
35576929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 35576924 - 35576870
Alignment:
| Q |
256 |
ggtttatcgttttttattaggttaattcggttttaaacaaagctacccacattac |
310 |
Q |
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| T |
35576924 |
ggtttatcgttttttattaagttaattcgattttaaacaaagctatccacattac |
35576870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 41455308 - 41455375
Alignment:
| Q |
61 |
gtgatataggtttagtttgtgtttatcttatattgcggttctatttgattttgttcggttagtaaaat |
128 |
Q |
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| T |
41455308 |
gtgatatatatttaattagtgtttttcttatattgcggttcgatttggtttggttcggttggtaaaat |
41455375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 35143205 - 35143280
Alignment:
| Q |
25 |
attaaaaacaagttaaaaagtattgagatggatgtggtgatataggtttagtttgtgtttatcttatattgcggtt |
100 |
Q |
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| T |
35143205 |
attaaaaacaagttaaaaggtattgggatgggtaaggtgacataggtttagattatgtttatcctatgttacggtt |
35143280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 39157948 - 39157879
Alignment:
| Q |
70 |
gtttagtttgtgtttatcttatattgcggttctatttgattttgttcggttagtaaaataaaaactacaa |
139 |
Q |
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| T |
39157948 |
gtttaattagtgtttatcttatgttgcggtttgatttggtttggttcggttgataaaataaaaaccacaa |
39157879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 20986834 - 20986906
Alignment:
| Q |
61 |
gtgatataggtttagtttgtgtttatcttatattgcggttctatttgattttgttcggttagtaaaataaaaa |
133 |
Q |
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| T |
20986834 |
gtgatatatatttaattagtgtttttcttatattgcggtttggtttggtttggttcggttagtaaaatcaaaa |
20986906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 28927775 - 28927815
Alignment:
| Q |
80 |
tgtttatcttatattgcggttctatttgattttgttcggtt |
120 |
Q |
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| T |
28927775 |
tgtttttcttatattgcggtttgatttgattttgttcggtt |
28927815 |
T |
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