View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_high_2 (Length: 591)
Name: NF17185_high_2
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Original strand, 36945897 - 36946326
Alignment:
| Q |
8 |
agattattcttaatatgaatagatagggaagatttttcttaagatcgatagataacttgtagctatgtaactttgcaatcgtgtgataatatttctcgag |
107 |
Q |
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| T |
36945897 |
agatttttcttaagatgaatagataaggaagatttttcttaagatcgatagataatttgtagctatgtaactttgcaatcgtgtgataatatttctcgag |
36945996 |
T |
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| Q |
108 |
ctttatttctgaacacaggtcagaactatgcaatctagaggcatctgcaacaccacttagttatgttgaaactgaggacatctgcggaaggcctttggga |
207 |
Q |
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| T |
36945997 |
ctttatttctgaacacaggtcagaactatgcaatctaaaggcatctgcaacaccacttagttatgttgaaactgaggacatctgtggaaggcctttggga |
36946096 |
T |
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| Q |
208 |
ctcagatttgacaagaaaactggtgatttatacatagcagatgcatatttcgggcttatgaaggtggggcctcaaggtggtttcgcaacatctcttgcaa |
307 |
Q |
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| T |
36946097 |
ctcagatttgacaagaaaactggtgatttatacatagcagatgcatatttcgggcttatgaaggtggggcctcaaggtggtttcgcaacatctcttgcaa |
36946196 |
T |
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| Q |
308 |
ccgaggcagaaggagtaccatttagatgtactaatgatgtagacattgatacagaagggaacgtttacttcaccgatagcagcactaaatatcagagaag |
407 |
Q |
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| T |
36946197 |
ccgaagcagaaggagtaccatttagatttactaatgatgtagacattgatacagaagggaacgtttacttcaccgatagcagcactaaatatcagagaag |
36946296 |
T |
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| Q |
408 |
gttgttagtaatctctttacttgttaacac |
437 |
Q |
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| T |
36946297 |
gttgttagtaatctctttacttgttaacac |
36946326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 477 - 574
Target Start/End: Original strand, 36946321 - 36946418
Alignment:
| Q |
477 |
taacacaaaagtttggctggttttattggtgctgacttctgatgtcattctacatgcaggaatttcattcagctgatactttctggtgacaatagtgg |
574 |
Q |
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| T |
36946321 |
taacacaaaagtttggctggttttattggtgctgacttctgatgtcattctacatgcaggaatttcattcagctgatactttctggtgacaatagtgg |
36946418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 157 - 320
Target Start/End: Complemental strand, 17768993 - 17768830
Alignment:
| Q |
157 |
acaccacttagttatgttgaaactgaggacatctgcggaaggcctttgggactcagatttgacaagaaaactggtgatttatacatagcagatgcatatt |
256 |
Q |
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| T |
17768993 |
acaccatttagttatgtgaagactgagcacatatgtggaaggcctttgggactcagattcgacaagaaaacaggtgaattgtacattgcagatgcatatc |
17768894 |
T |
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| Q |
257 |
tcgggcttatgaaggtggggcctcaaggtggtttcgcaacatctcttgcaaccgaggcagaagg |
320 |
Q |
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| T |
17768893 |
ttgggctgttgaaggtggggcccgagggaggtttagcaacatctcttgcaactgaggctgaagg |
17768830 |
T |
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