View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17185_high_20 (Length: 296)
Name: NF17185_high_20
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 3792048 - 3792318
Alignment:
| Q |
10 |
ataatactgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
109 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3792048 |
ataattctgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
3792147 |
T |
|
| Q |
110 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccnnnnnnna |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
3792148 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccttttttta |
3792247 |
T |
|
| Q |
210 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcaaagactgctacgtttgtgt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
3792248 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcgaagactgctacgtttgtgt |
3792318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 12812485 - 12812755
Alignment:
| Q |
10 |
ataatactgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12812485 |
ataattctgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
12812584 |
T |
|
| Q |
110 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccnnnnnnna |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12812585 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccttttttta |
12812684 |
T |
|
| Q |
210 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcaaagactgctacgtttgtgt |
280 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12812685 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcgaagactgctacgtttgtgt |
12812755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 45488818 - 45488671
Alignment:
| Q |
38 |
aaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcctccaacatggacaaacaaaatctaagac |
137 |
Q |
| |
|
||||| || ||||||||||| | |||||| | ||| |||||||| | ||| ||| ||||||||| |||| || | ||||||||| |||||| | || | |
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| T |
45488818 |
aaccatttctcatctatgtgcacaacattatacatggacttaaattgtgggtcatgaggaatgctagtttcatcaagcatggacaagcaaaatttgagtc |
45488719 |
T |
|
| Q |
138 |
gagctttcatattatcatctgtcatgtgtggttttagtgcacttgaat |
185 |
Q |
| |
|
|||||||||||||| |||| ||| |||||| ||||||| | |||||| |
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| T |
45488718 |
gagctttcatattactatctttcaagtgtggctttagtgtatttgaat |
45488671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 1653906 - 1653636
Alignment:
| Q |
10 |
ataatactgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1653906 |
ataattctgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
1653807 |
T |
|
| Q |
110 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccnnnnnnna |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
1653806 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccttttttta |
1653707 |
T |
|
| Q |
210 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcaaagactgctacgtttgtgt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1653706 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcgaagactgctacgtttgtgt |
1653636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 9130296 - 9130566
Alignment:
| Q |
10 |
ataatactgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9130296 |
ataattctgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
9130395 |
T |
|
| Q |
110 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccnnnnnnna |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
9130396 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccttttttta |
9130495 |
T |
|
| Q |
210 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcaaagactgctacgtttgtgt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
9130496 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcgaagactgctacgtttgtgt |
9130566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 37151561 - 37151291
Alignment:
| Q |
10 |
ataatactgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37151561 |
ataattctgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
37151462 |
T |
|
| Q |
110 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccnnnnnnna |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
37151461 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccttttttta |
37151362 |
T |
|
| Q |
210 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcaaagactgctacgtttgtgt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
37151361 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcgaagactgctacgtttgtgt |
37151291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 45221880 - 45221610
Alignment:
| Q |
10 |
ataatactgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45221880 |
ataattctgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
45221781 |
T |
|
| Q |
110 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccnnnnnnna |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45221780 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccttttttta |
45221681 |
T |
|
| Q |
210 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcaaagactgctacgtttgtgt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45221680 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcgaagactgctacgtttgtgt |
45221610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 23779834 - 23779564
Alignment:
| Q |
10 |
ataatactgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23779834 |
ataattctgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
23779735 |
T |
|
| Q |
110 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccnnnnnnna |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23779734 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccttttttta |
23779635 |
T |
|
| Q |
210 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcaaagactgctacgtttgtgt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23779634 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcgaagactgctacgtttgtgt |
23779564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 52637109 - 52637379
Alignment:
| Q |
10 |
ataatactgagattttttggtcacatagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
109 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52637109 |
ataattctgagattttttggtcacagagaaccacttttcatctatgtgaataacattgtgcattgacttaaactttggctcaaatggaatgctactttcc |
52637208 |
T |
|
| Q |
110 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccnnnnnnna |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52637209 |
tccaacatggacaaacaaaatctaagacgagctttcatattatcatctgtcatgtgtggttttagtgcacttgaatgccgacgcaaaacaccttttttta |
52637308 |
T |
|
| Q |
210 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcaaagactgctacgtttgtgt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
52637309 |
ttaacctcattagttgtccagtggtacactctaatgcttctgctagagatcgaagactgctacgtttgtgt |
52637379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 18496263 - 18496312
Alignment:
| Q |
101 |
ctactttcctccaacatggacaaacaaaatctaagacgagctttcatatt |
150 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
18496263 |
ctactttcctcaagcatggacaagaaaaatctaagacgacctttcatatt |
18496312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 3055212 - 3055184
Alignment:
| Q |
252 |
ctagagatcaaagactgctacgtttgtgt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3055212 |
ctagagatcaaagactgctacgtttgtgt |
3055184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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